Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30p12
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    43   2e-04
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    38   0.005
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    31   0.62 
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr...    31   0.82 
Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF106582-7|ABD94096.1|  806|Caenorhabditis elegans Hypothetical ...    31   1.1  
AF106582-6|ABD94095.1|  834|Caenorhabditis elegans Hypothetical ...    31   1.1  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    30   1.4  
U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AF164625-1|AAD47816.1|  944|Caenorhabditis elegans tandem-array-...    28   7.6  
AF022974-6|AAC48041.1|  944|Caenorhabditis elegans Tandem array ...    28   7.6  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 41/209 (19%), Positives = 81/209 (38%), Gaps = 8/209 (3%)
 Frame = +3

Query: 60  CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPG--EISYVHFAVNHPQFSEE 233
           C   +L   H ++ A CF  +    +Y  ++         G  +I Y+     +P + ++
Sbjct: 54  CGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLY-KD 112

Query: 234 NYDKDVSIVRVTH-AIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGGSASDGNLH 410
            +  D++I+ + +  I F                       + GWG+    G      L 
Sbjct: 113 IFSHDIAILEIPYPGIEFNEYAQPICLPSKDFVYTPGRQCVVSGWGSM---GLRYAERLQ 169

Query: 411 KLELIVTNKENCRNQYKDHDRVVTDHKFCAGLVRDGGRDYDNTDLGAPAFFQN-----AL 575
              + + N+ +C N  + +  + +   FCAG + +GG D    D G P   +       L
Sbjct: 170 AALIPIINRFDCVNSSQIYSSM-SRSAFCAGYL-EGGIDSCQGDSGGPFACRREDGAFVL 227

Query: 576 VGIVSFGKSNSNDAYPVVLTSISSFTEWI 662
            G++S+G   +    P + T ++ +  WI
Sbjct: 228 AGVISWGDGCAQKKQPGIYTMVAPYLSWI 256


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 46/209 (22%), Positives = 78/209 (37%), Gaps = 7/209 (3%)
 Frame = +3

Query: 57  QCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFAVNHPQFS--- 227
           +C G ++     L+ A CF  +    +Y   + G   RS  G    V     HP ++   
Sbjct: 83  RCGGSLIDPNFVLTAAHCFAKDRRPTSYSVRVGG--HRSGSGSPHRVTAVSIHPWYNIGF 140

Query: 228 EENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGGSASDGNL 407
             +YD   +I+R+   ++                        + GWG+T++G S S   L
Sbjct: 141 PSSYD--FAIMRIHPPVNTSTTARPICLPSLPAVENRLCV--VTGWGSTIEGSSLSAPTL 196

Query: 408 HKLELIVTNKENCRNQYKDHDRVVTDHKFCAGLVRDGGRDYDNTDLGAPAFFQN----AL 575
            ++ + + +   C +      R+      CAG    G  D    D G P          L
Sbjct: 197 REIHVPLLSTLFCSSLPNYIGRIHLPSMLCAG-YSYGKIDSCQGDSGGPLMCARDGHWEL 255

Query: 576 VGIVSFGKSNSNDAYPVVLTSISSFTEWI 662
            G+VS+G   +    P V  ++ S + WI
Sbjct: 256 TGVVSWGIGCARPGMPGVYGNVHSASTWI 284


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 248 CEHRTSNTCHPLRPKYPAGCYYPTRCRNTPGYFC 349
           C+   +N+C  L P+   GC  PT CRNT    C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306


>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
           protein ZC84.6 protein.
          Length = 1474

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = -2

Query: 621 GRRHWNCSFQKTQCLPTHFGRRQGHPSQYYRSHGHHPGPNRRRICDQSRRDHDPYTGSCS 442
           G   W C    + C P   G R   PS   R   +H G  ++     +R  +DP +G CS
Sbjct: 311 GSTQWCCPTVASVCGPV--GGRPLDPSVNNRGTVYHSGVEKQGTATSTRFFYDPQSGKCS 368


>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 272 CHPLRPKYPAGCYYPTRCRNTPG 340
           C P+RPK P G   P  CR  PG
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPG 124


>AF106582-7|ABD94096.1|  806|Caenorhabditis elegans Hypothetical
           protein W05F2.4b protein.
          Length = 806

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 591 KTQCLPTHFGRRQGHPSQYYRSHGHHPGPNRRR 493
           K +  PT FGR Q H +Q + +   +  PNR R
Sbjct: 390 KRRSFPTSFGRPQAHQAQQHHAPSDYEKPNRFR 422


>AF106582-6|ABD94095.1|  834|Caenorhabditis elegans Hypothetical
           protein W05F2.4a protein.
          Length = 834

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 591 KTQCLPTHFGRRQGHPSQYYRSHGHHPGPNRRR 493
           K +  PT FGR Q H +Q + +   +  PNR R
Sbjct: 418 KRRSFPTSFGRPQAHQAQQHHAPSDYEKPNRFR 450


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +2

Query: 248  CEHRTS--NT-CHPLRPKYPAGCYYPTRCRNTPGY 343
            CE   +  NT C P+  K P  C+   RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897


>U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical
           protein F07E5.1 protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +1

Query: 25  YSYPS*INGSNSALVLFSPTTTTFQLL 105
           YSYPS I   +S +V+ + TTTTF LL
Sbjct: 75  YSYPSPIVLEHSFVVMTTTTTTTFSLL 101


>U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical
           protein R04E5.8b protein.
          Length = 142

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 570 HFGRRQGHPSQYYRSHGHHPGPNRRRICDQSR-RDHD 463
           H    + H    + + GHH GP R    D++R R+HD
Sbjct: 57  HIAPARAHNRGQHHNRGHHHGPPRNHNQDRNRHRNHD 93


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 570  HFGRRQGHPSQYYRSHGHHPGPNRRRICDQSR-RDHD 463
            H    + H    + + GHH GP R    D++R R+HD
Sbjct: 901  HIAPARAHNRGQHHNRGHHHGPPRNHNQDRNRHRNHD 937


>Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical
           protein ZC482.6 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +3

Query: 45  QWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFAVNHPQF 224
           ++F+Q    VLT   + S A CF   F    YR  +    R   P  +  +  +V HP  
Sbjct: 307 RFFEQAQSFVLTFQIFNSVAHCFICFFLSSQYRETVKTMIRIKTPPTVMVLESSV-HPTT 365

Query: 225 SEENYDKDVSI 257
            E +   ++ I
Sbjct: 366 RETSKTSNLVI 376


>AF164625-1|AAD47816.1|  944|Caenorhabditis elegans
           tandem-array-modifier protein protein.
          Length = 944

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 576 PTHFGRRQGHPSQYYRSHGHHPGPNRRRICDQSRRDH 466
           P H   +QG P   Y    HHP     ++ DQ +R H
Sbjct: 463 PMHHQMQQGPPRMMYMHQQHHP---MHQVEDQMQRQH 496


>AF022974-6|AAC48041.1|  944|Caenorhabditis elegans Tandem array
           expression modifierprotein 1 protein.
          Length = 944

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 576 PTHFGRRQGHPSQYYRSHGHHPGPNRRRICDQSRRDH 466
           P H   +QG P   Y    HHP     ++ DQ +R H
Sbjct: 463 PMHHQMQQGPPRMMYMHQQHHP---MHQVEDQMQRQH 496


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,186,419
Number of Sequences: 27780
Number of extensions: 435801
Number of successful extensions: 1189
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)