Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30p08
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 683 LCIGKYSVRDCPTCHFPTK*VEYPNSFKYCGNIFSV 576
           +C   ++V    T H+ T   E P   +YC   FSV
Sbjct: 96  ICGKTFAVPARLTRHYRTHTGEKPYQCEYCSKSFSV 131


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 247 IYFYFPNKSYDQITTYKIEILQKKSRSLNTLFSP 146
           IYF   N    QITT  + I    + +L  L+SP
Sbjct: 725 IYFGTGNAHETQITTLCVAISLSATVTLVCLYSP 758


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 247 IYFYFPNKSYDQITTYKIEILQKKSRSLNTLFSP 146
           IYF   N    QITT  + I    + +L  L+SP
Sbjct: 815 IYFGTGNAHETQITTLCVAISLSATVTLVCLYSP 848


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 34  VIYIYRATFYYFF 72
           V+ I R T YYFF
Sbjct: 224 VVIIRRRTLYYFF 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,590
Number of Sequences: 438
Number of extensions: 4569
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)