Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30p07
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    29   0.92 
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    28   1.6  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    27   2.1  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   3.7  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   4.9  
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce...    26   6.5  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   8.6  
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    25   8.6  

>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +2

Query: 173 NTDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDEAVLVPSRLMNLPQ 352
           N  + T LEN  N  R I  N    +  Q    D+ K +++   MDE   V ++  N+P 
Sbjct: 475 NISVITLLENKENGSRLIVANCHIHWDPQ--FRDV-KVIQVAMLMDEIAQVATKFRNMPS 531

Query: 353 EGDDD 367
           +   D
Sbjct: 532 KIPSD 536


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -3

Query: 471 RSDTRLPRSTCSWLSPPDHSNSVFRSLSMENMLNGSSSPSCGKFIRRLGTKTASSMVLTI 292
           R +T+LPR    + +PP HS +V   L+ +    G  S   G+ I     KT   ++ + 
Sbjct: 3   RLNTQLPRM---YSAPPGHSKAVSTELNKDLSSVGGRSAKLGQVIHHCFYKTGLIILESR 59

Query: 291 LTNFSMS 271
           L  F  S
Sbjct: 60  LNVFGTS 66


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -3

Query: 273 SFRMLCFENSAPSLRAILRRVFLLFSNFVDMSVLKDIFWCYLTTLNI 133
           +F +  F+N   SLR+IL R   L  +FV   V   +F  ++ TLNI
Sbjct: 221 AFNLFSFKNKFSSLRSILFRSEGL--SFVQFLVCIAVFATFMYTLNI 265


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 161 KMSFNTDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEK 283
           K +  + IST  +  R T     RNDG + +     ND EK
Sbjct: 239 KRNVVSPISTHTKKRRRTANTSQRNDGLDLNTVFTTNDWEK 279


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +3

Query: 414 CGQVVIAKSRWSEGGACLTSATLKAMLLVQRVTLESKAKMNASPQRGPPLRVAVIYVVCA 593
           C  VV+A ++  +    +T+A  +  L  +  TL    K N+SP+ G  +  + +  VC 
Sbjct: 510 CWVVVLAFTQICQVAHNVTTAEFR--LFKRYGTLVPPTKQNSSPKNGHGIHGSFLRTVCG 567

Query: 594 VL 599
           +L
Sbjct: 568 IL 569


>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = +2

Query: 134 IFKVVK*HQKMSFNTDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDE 313
           I+K V      SFN  +S+    ++ T   +    G+   + S+  D  +  + V+++ E
Sbjct: 9   IYKGVNDSTTFSFNATVSSITPFAKKTTHYLRTKIGSRVEELSLPEDYVELEQQVDSLKE 68

Query: 314 AV-LVPSRLMNLPQEGDDDPFSMFSMLND 397
           A  LV   +  +  +G D P +    + D
Sbjct: 69  AYNLVLPIVETVEVDGYDYPTNFRDSITD 97


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 18/76 (23%), Positives = 39/76 (51%)
 Frame = +2

Query: 182  ISTKLENSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDEAVLVPSRLMNLPQEGD 361
            I++K+E++ + LRK+        +++   +D  +   ++  ++EAV   + L  L Q+  
Sbjct: 977  IASKIESTDDNLRKLQERLADLRTRERNASDNLRLRALMRQLEEAVTQKNYL--LSQQSH 1034

Query: 362  DDPFSMFSMLNDLKTE 409
            DD  S    +  LK++
Sbjct: 1035 DDRESFRERMQILKSK 1050


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 210 TPCAKSPVMMVLNFQNRAS*MTWRNLSKWL 299
           +PC   PV  + +  +R + +T   L KWL
Sbjct: 271 SPCGNCPVSDICDANSRVNPITCEYLDKWL 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,983
Number of Sequences: 5004
Number of extensions: 55398
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)