Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30p07
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0141 + 1631649-1631727,1633607-1633651,1633841-1634454,163...    29   3.9  
03_02_0061 + 5342338-5342401,5343025-5343131,5343962-5344009,534...    29   3.9  
01_01_1038 - 8195211-8195839,8195961-8196087                           29   3.9  
08_02_1019 - 23657175-23658047                                         29   5.1  
06_01_0719 + 5239238-5239635,5239735-5239945,5240379-5240454,524...    29   5.1  
03_05_0460 + 24547706-24547747,24547900-24548103                       28   9.0  
01_06_0787 - 31999632-32000045,32000128-32000214,32000295-320005...    28   9.0  

>04_01_0141 +
           1631649-1631727,1633607-1633651,1633841-1634454,
           1634569-1634627,1634721-1634911,1636739-1637073
          Length = 440

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 414 CGQVVIAKSRWSEGGACLTSATLKAM 491
           C +V + K+ WS GG C T+  LKAM
Sbjct: 142 CARVAMYKACWS-GGGCSTAGQLKAM 166


>03_02_0061 +
           5342338-5342401,5343025-5343131,5343962-5344009,
           5344297-5344399,5345152-5345234,5345271-5346089,
           5346189-5346338,5346420-5346797
          Length = 583

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 246 SAPSLRAILRRVFLLFSNFVDMSVLKDIFWCYLTTL 139
           S P  R ++ ++ +LFS  +D +V     WC++ +L
Sbjct: 109 SLPQTRRVMAKLLVLFSLPIDQAVTLTDIWCHIHSL 144


>01_01_1038 - 8195211-8195839,8195961-8196087
          Length = 251

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 562 SGGPRCGLAFIFAFDSRVTR-CTRSIAFSVAEVRHAPPSLHL 440
           +GG  CG  F  A D+R T+ C    + +V      PP+  L
Sbjct: 69  NGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCPPNYAL 110


>08_02_1019 - 23657175-23658047
          Length = 290

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -2

Query: 205 AVFQFCRYVCVERHLL-VLFNNFKY 134
           AV QFC  VCV+RH+L V  +N K+
Sbjct: 259 AVQQFCEEVCVKRHVLKVWMHNNKH 283


>06_01_0719 +
           5239238-5239635,5239735-5239945,5240379-5240454,
           5240573-5240675,5241089-5241157,5241318-5241354,
           5241445-5241519,5241598-5241649,5241752-5241796,
           5241994-5242080,5242348-5242445
          Length = 416

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 459 RLPRSTCSWLSPPDHSNSVFRSLSMENMLNGSSSPSCGKFIRRLGTKTASSMVL 298
           +  R+ C WLS   +  ++ R +SME    G SS +C   I  L ++  +  VL
Sbjct: 29  KFARAFCYWLSRVSNPKNLRRLMSME----GPSSGACQSHINHLSSRMQNLAVL 78


>03_05_0460 + 24547706-24547747,24547900-24548103
          Length = 81

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 605 GGENGANHVDDGDTQRRPSLRTRVHLRLRF 516
           GG NGA   D GD+  R S  TR+   +R+
Sbjct: 44  GGGNGARAADVGDSSDRASTPTRLRAAVRW 73


>01_06_0787 -
           31999632-32000045,32000128-32000214,32000295-32000584,
           32000670-32000844,32000930-32001142,32001227-32001328,
           32001418-32001822,32001922-32002134,32002312-32002357,
           32002602-32002867,32003936-32004012,32004095-32004170,
           32004339-32004418,32004945-32005036,32005132-32005171,
           32005301-32005400,32005815-32005962,32006071-32006153,
           32006207-32006383
          Length = 1027

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
 Frame = +3

Query: 414 CGQVVIAKSRWSEGGACLTSATLKAMLLVQRVTLESKAKMNASPQR--GPPLRVAVIYVV 587
           CG  V+A S  S+  A  T+A  +     QR+ LE KAK+ A  +R  G P + A   + 
Sbjct: 433 CG--VVATS--SDAAAAATAADTRE----QRLRLE-KAKLKAEIERLRGTPGKSAADGIA 483

Query: 588 CAVLSANSLSQQHNSRGP 641
               SA++ + Q NSR P
Sbjct: 484 SPPCSASAGAMQTNSRSP 501


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,565,976
Number of Sequences: 37544
Number of extensions: 401776
Number of successful extensions: 1111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)