Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30p03
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 147 1e-36
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 66 4e-12
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 61 1e-10
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 59 8e-10
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 51 2e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 50 3e-07
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 50 3e-07
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 48 2e-06
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 47 2e-06
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 46 8e-06
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 45 1e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 45 1e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 45 1e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 45 1e-05
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 45 1e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 44 2e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 44 3e-05
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 43 4e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 42 7e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 42 1e-04
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 42 1e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 41 2e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 41 2e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 5e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 39 7e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 7e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 39 9e-04
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 38 0.002
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 37 0.004
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 37 0.004
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.005
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 35 0.011
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.019
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 34 0.019
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.057
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 32 0.10
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 31 0.13
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.18
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 30 0.31
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 30 0.31
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 30 0.40
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 30 0.40
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 0.94
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 29 0.94
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 1.6
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 28 1.6
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2... 28 1.6
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 2.2
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 5.0
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 6.6
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 6.6
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 8.7
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 147 bits (357), Expect = 1e-36
Identities = 69/163 (42%), Positives = 103/163 (63%), Gaps = 5/163 (3%)
Frame = +3
Query: 261 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 440
K+F+GGL+WETTD LRD+F +GE+ V D TGRSRGF F+ FK P+ +++VM+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 441 GEHTINNKKVDPKKAKARH-----GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 605
EH ++ K +DPK+A R K+FVGG+ + +++E RNFF++FG +L+ + DK
Sbjct: 224 -EHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDK 282
Query: 606 TKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVXACNTK 734
+ +GF F+T+E+E V + P TI GK V+V K
Sbjct: 283 DTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 63.3 bits (147), Expect = 4e-11
Identities = 26/72 (36%), Positives = 50/72 (69%)
Frame = +3
Query: 498 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 677
GK+F+GGL+ E +DD +R++F +FG +L+ + D T + +GF F+TF++ + VN+++
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM- 221
Query: 678 TPKRTIGGKEVD 713
+ + + GK +D
Sbjct: 222 SKEHHLDGKIID 233
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 66.5 bits (155), Expect = 4e-12
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 23/150 (15%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA- 440
+FVG LSW D+ L F YG I V D +GRS+G+ ++ F+ PE+ +AA
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 441 GEHTINNKKV-----DPKK------AKARHGK-----------IFVGGLSSEISDDEIRN 554
G I+ + V +P+ A+ R G +FVG LS ++D++
Sbjct: 325 GTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLST 384
Query: 555 FFSEFGTILEVEMPFDKTKNQRKGFCFITF 644
F G I + +P D + KGF ++TF
Sbjct: 385 AFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Score = 56.4 bits (130), Expect = 4e-09
Identities = 25/64 (39%), Positives = 38/64 (59%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 443
+FVG LS+ T+ +L FG G+I+SI + TDP +GR +GF ++ F +S K +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 444 EHTI 455
H I
Sbjct: 428 GHFI 431
Score = 40.7 bits (91), Expect = 2e-04
Identities = 24/82 (29%), Positives = 37/82 (45%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 683
+FVG LS + D + F E+GTI+ + D + KG+ ++ FE+ + K
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAA----KAA 320
Query: 684 KRTIGGKEVDVXACNTKTRWPR 749
G KE+D N PR
Sbjct: 321 VAANGTKEIDGRMVNLDLSNPR 342
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 61.3 bits (142), Expect = 1e-10
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 443
L+VG L T+ L + F + G + SI V D T RS G+A++ F E +K +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 444 EHTINN--------KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 599
+T+ + DP K G +F+ L I + + + FS FG IL ++
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAV 201
Query: 600 DKTKNQRKGFCFITFESEQVVN 665
D+ N KG+ F+ F+S + N
Sbjct: 202 DELGN-AKGYGFVHFDSVESAN 222
Score = 46.4 bits (105), Expect = 4e-06
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 434
LF+ L E D+ L+ F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 58.8 bits (136), Expect = 8e-10
Identities = 25/63 (39%), Positives = 40/63 (63%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 443
LFVG L +ETTD +L++HFG G+I + + T +TG+ +GF F+ F ++ K M G
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELG 289
Query: 444 EHT 452
++
Sbjct: 290 HNS 292
Score = 33.1 bits (72), Expect = 0.043
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 644
+FVG L E +D +++ F + G I V + + + KGF F+ F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 50.8 bits (116), Expect = 2e-07
Identities = 25/79 (31%), Positives = 42/79 (53%)
Frame = +3
Query: 444 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 623
E TI K + K + + G ++VG L + ++R +FS+FG +L + M ++ K
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK 146
Query: 624 GFCFITFESEQVVNDLLKT 680
+ FI FES V N + +T
Sbjct: 147 HYAFIEFESLDVANVVAET 165
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 50.4 bits (115), Expect = 3e-07
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Frame = +3
Query: 135 LMEMQRTVAVIRKIITVLRPQDAMTTGVSLXXXXXXXXXTP*KLFVGGLSWETTDKELRD 314
L+EM+ VA + LR + ++VG + + T +EL+
Sbjct: 14 LLEMKERVAEMEAEAAKLRAMQEQLDNETEALRNDKESIDAQSVYVGNVDYSVTPEELQS 73
Query: 315 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK--KVDPKK 482
HF + G + + + D TG +GFA+I F P + + ++ + KV PK+
Sbjct: 74 HFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKR 131
Score = 36.3 bits (80), Expect = 0.005
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 674
++VG + ++ +E+++ F+ G++ V + DK KGF +I F +V + L
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 50.4 bits (115), Expect = 3e-07
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 443
+FVG L++E ++ L +FG G I+ + + DP T +GFA+I FK +DK +
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 444 E 446
E
Sbjct: 332 E 332
Score = 37.1 bits (82), Expect = 0.003
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND-LLKT 680
+FVG L+ E ++ + +F + G+I V + D N KGF +I F+ V+ LL
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 681 PKRTIGGKEVDV-XACNTKTR 740
K+ G+ + + A +TK +
Sbjct: 332 EKKMPEGRTLRIMRAKSTKPK 352
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 47.6 bits (108), Expect = 2e-06
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +3
Query: 501 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLK 677
++F+ L+ ++D++++ F FG + +V MP DK N KGF +I F +++ V L+
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 678 TPKRTIGGKEVDVXACNTKT 737
+ G+ + V ++
Sbjct: 384 LDAKPFQGRLLHVLPAKARS 403
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 47.2 bits (107), Expect = 2e-06
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES--IDKVMA 437
LFVG L +++ + L+ HF G++ S+ + TD +GR +G+AF+ F P++ I K +
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALK 153
Query: 438 AGEHTI-NNKKVDPKKAKARHGK 503
HTI +K++ + GK
Sbjct: 154 F-HHTIYKERKINIELTAGGGGK 175
Score = 42.7 bits (96), Expect = 5e-05
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Frame = +3
Query: 444 EHTINNKKVDPKKAKARHGK-------IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 602
+H+++N K+K + GK +FVG L + S + ++ F G + V +P D
Sbjct: 67 KHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTD 126
Query: 603 KTKNQRKGFCFITF 644
KT ++KG+ F+ F
Sbjct: 127 KTSGRQKGYAFVEF 140
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 45.6 bits (103), Expect = 8e-06
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Frame = +3
Query: 414 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 593
+ ++ + A H + P + +A ++FVG LS+ EIR+ F GT+ +V +
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 594 PFDKTKNQRK----GFCFITFESEQVVNDLLKTPK-RTIGGKEVDV 716
PF + + + G F+TF +++ V+ ++T +T+ +E+ V
Sbjct: 76 PFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVV 121
Score = 35.1 bits (77), Expect = 0.011
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +3
Query: 261 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR----GFAFIVFKAPESIDK 428
++FVG LS T E+R F G + + + +R G AF+ F E +DK
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 429 VMAAGEHTINNKKVDPKK 482
+ T+N K +D ++
Sbjct: 105 AI----ETLNGKTLDDRE 118
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 45.2 bits (102), Expect = 1e-05
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 21/178 (11%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA-A 440
+FV L+ T +EL D F G + + D +GRS+G A++ F +S+ +A +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 441 GEHTINNKKV-----DPKKAKARHG--------------KIFVGGLSSEISDDEIRNFFS 563
G+ + + K KAR ++ V + ++D++++ F
Sbjct: 302 GKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFE 361
Query: 564 EFGTILEVEMPFDKTKNQRKGFCFITFESE-QVVNDLLKTPKRTIGGKEVDVXACNTK 734
FG I V + D +N+ KGF +I + + N L K + G+ + V N K
Sbjct: 362 PFGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDK 418
Score = 36.7 bits (81), Expect = 0.004
Identities = 16/53 (30%), Positives = 34/53 (64%)
Frame = +3
Query: 261 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 419
+L V + + TD++++ F +G+IE ++++ D + RS+GF +I ++ P S
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPIS 392
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.8 bits (101), Expect = 1e-05
Identities = 17/51 (33%), Positives = 33/51 (64%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 656
I++G L ++++D+I FSEFG +++ + DK + KGF F+ +E ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 419
+++G L ++ + ++ F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 407
+F+ LS++T + ++ F YG IE I V + TG+S G+AF+VF+
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.8 bits (101), Expect = 1e-05
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Frame = +3
Query: 423 DKVMAAGEHTINNKKVD---PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 593
D+V E T +KK P+ ++ +FV G++S + +DE++ FS+FGT+ V +
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRI 132
Query: 594 PFDKTKNQRKGFCFITFES 650
+ +GF F++F +
Sbjct: 133 MREPVTKASRGFGFLSFST 151
Score = 39.5 bits (88), Expect = 5e-04
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 416
LFV G++ + EL+ F +G + + + +P T SRGF F+ F E
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVE 153
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 44.8 bits (101), Expect = 1e-05
Identities = 24/75 (32%), Positives = 40/75 (53%)
Frame = +3
Query: 270 VGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 449
VG LS++ T+ +L D FG + SI + DP T RSRGF ++ F+ +++ +A
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 450 TINNKKVDPKKAKAR 494
+ + V A+ R
Sbjct: 156 DLMGRPVRITVAEPR 170
Score = 34.3 bits (75), Expect = 0.019
Identities = 16/80 (20%), Positives = 39/80 (48%)
Frame = +3
Query: 510 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 689
VG LS +++++++ +FF E + + + D + +GF ++ FE+ ++ L
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 690 TIGGKEVDVXACNTKTRWPR 749
+ G+ V + + + R
Sbjct: 156 DLMGRPVRITVAEPRRSFAR 175
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/69 (37%), Positives = 38/69 (55%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 443
LFV L+++T +L + F G I+ V T+P TG +RG+ F+ F E D AA
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE--DAQRAAK 64
Query: 444 EHTINNKKV 470
E + NKK+
Sbjct: 65 E--LKNKKL 71
Score = 39.5 bits (88), Expect = 5e-04
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 407
+FV L +E T++EL +HF +G + + DP T RS G FI F+
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
Score = 34.7 bits (76), Expect = 0.014
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 644
+FV L+ + D++ NFFS+ G I + + + +G+ F+TF
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
Score = 31.5 bits (68), Expect = 0.13
Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +3
Query: 417 SIDKVMAAGEHTINNKKVDP--KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 590
++D V +G+ + + ++ + + +FV L E ++ E+ N F +FG + +
Sbjct: 248 NVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAK 307
Query: 591 MPFDKTKNQRKGFCFITFESEQVVNDLLK 677
+ D ++ G FI F E+ + L+
Sbjct: 308 LVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 404
L V LS +T ++ELRD F +G I+ + + D TGR++GFAF+ +
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 477 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 644
K+ + + V LS + ++E+R+ F FG I V + DK + KGF F+++
Sbjct: 195 KRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 43.2 bits (97), Expect = 4e-05
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +3
Query: 255 P*KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 422
P ++FV +S T ++LR HF ++GE+ +++K +P TG S G I F SI
Sbjct: 93 PTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSI 148
Score = 34.3 bits (75), Expect = 0.019
Identities = 11/55 (20%), Positives = 29/55 (52%)
Frame = +3
Query: 501 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 665
++FV +S ++ +++R F FG + ++++ + G C I+F+ ++
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSIS 149
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 42.3 bits (95), Expect = 7e-05
Identities = 18/75 (24%), Positives = 40/75 (53%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 443
+FVG + ++ +++++ + F G +++ + DP TG +G+ F F E+ A
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSET----TAMA 64
Query: 444 EHTINNKKVDPKKAK 488
+NN ++ P+K +
Sbjct: 65 VRKLNNSELGPRKIR 79
Score = 33.9 bits (74), Expect = 0.025
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT-FESEQVVNDLLKT 680
+FVG + ++S+ ++ F++ G + ++ D KG+ F F+SE + K
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 681 PKRTIGGKEVDV 716
+G +++ V
Sbjct: 69 NNSELGPRKIRV 80
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.5 bits (93), Expect = 1e-04
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK----APESIDKV 431
++VG L W T+D+ L D F G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 41.5 bits (93), Expect = 1e-04
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +3
Query: 417 SIDKVMAAGEHTINNKKVDPKKAKA--RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 590
SI ++ A + I K D + A + ++VG LS ++++I FS+ G I +
Sbjct: 3 SITRLDAVSPYLIRRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRII 62
Query: 591 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT 692
M D+ GFCF+ + Q D LK RT
Sbjct: 63 MGVDRFTKTPCGFCFVEYFENQDALDSLKYISRT 96
Score = 34.3 bits (75), Expect = 0.019
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI-VFKAPESIDKVMAA 440
++VG LS+ TT++++ F GEI I + D T GF F+ F+ +++D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 441 GEHTINNKKVDPKKAKA-RHGKIFVGGLSSEISDDEIRNFF 560
+++ + + G+ + G S DE+R F
Sbjct: 94 SRTSLDERIIRADLDHGYEEGRQYGRGASGGQVRDEMREEF 134
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/73 (26%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = +3
Query: 495 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDL 671
H ++FVG L ++++D+ + FSE+ ++++ ++ D+ + + +GF F++F +S+Q +
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFLKAW 87
Query: 672 LKTPKRTIGGKEV 710
+ + IG + V
Sbjct: 88 REKNGKYIGSRPV 100
Score = 35.9 bits (79), Expect = 0.006
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 261 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 407
+LFVG L + D+ L F Y + V D G++RGF F+ FK
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFK 78
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 40.7 bits (91), Expect = 2e-04
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGE-IESINVKTDPNTGRSRGFAFIVFKAPESID-KVMA 437
LFVG L ++ L D F A G+ +++ V D N GRS+G+ F+ + + E+ D + A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEA 159
Query: 438 AGEHTINNKKVDPKKAKARHGK 503
+ NK + A R GK
Sbjct: 160 MNNQFLMNKPITVSYAFKREGK 181
Score = 34.3 bits (75), Expect = 0.019
Identities = 26/137 (18%), Positives = 56/137 (40%), Gaps = 8/137 (5%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV-MAA 440
+++G L + TD L + G + +I++ D GF F F + ++
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 441 GEHTINNKKVDPKKAKARHG-------KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 599
+ + K + +A G +FVG L + + + + FS G +++
Sbjct: 73 NQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVA 132
Query: 600 DKTKNQRKGFCFITFES 650
+ KG+ F++++S
Sbjct: 133 RDENGRSKGYGFVSYDS 149
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.5 bits (88), Expect = 5e-04
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +3
Query: 474 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 596
P+ A + +FVGGLS +S++E++ F FG I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 34.7 bits (76), Expect = 0.014
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVF 404
+FVG LS + ++ F + Y +S + TDP T SRG+ F+ F
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 28.7 bits (61), Expect = 0.94
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 374
+FVGGLS +++EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 39.1 bits (87), Expect = 7e-04
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 428
LFV L+ T D++L F +G+I S V D TG S +AFI F ES++K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
Score = 32.3 bits (70), Expect = 0.076
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 662
+FV L+ D+++ FS FG I+ ++ DK + FI F++++ V
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESV 298
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 39.1 bits (87), Expect = 7e-04
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 605
+FVGGL+S +S+ +++ F FG IL +++PF K
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 38.7 bits (86), Expect = 9e-04
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 407
LF+ LS++ T +E+ D FG YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/78 (20%), Positives = 41/78 (52%)
Frame = +3
Query: 261 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 440
+L+V + ++ +K++ F YG++ES+ + N + +GF ++V + + ++A
Sbjct: 758 ELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFN--QHKGFGYVVMTTNQDAENALSA 815
Query: 441 GEHTINNKKVDPKKAKAR 494
+ N+ ++ +K R
Sbjct: 816 AGKQLGNRVLNVVLSKPR 833
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 36.7 bits (81), Expect = 0.004
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKT 680
I V L+ ++ + I F +G I + MP K KG+C+I + +Q N + K
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 681 PKRTIGGKEVDV 716
+ G+E+ V
Sbjct: 161 NNAELDGEELFV 172
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 36.7 bits (81), Expect = 0.004
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Frame = +3
Query: 453 INNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI-------------LEVE 590
+NN K+ P + + I+VG + S +SD+EI FS++G + E
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKA 60
Query: 591 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVXA 722
PF KN + + F+ F + + + ++LK K T+G +++ + A
Sbjct: 61 KPFKPPKNGVQ-YGFVKFVNAESIEEVLKDAKGMTLGQRKLTIKA 104
Score = 34.3 bits (75), Expect = 0.019
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +3
Query: 291 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 470
T +L D F +G I S + PN+G S+G+ F+ F+ E+ + T+N V
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA----AVRAKDTLNGMMV 450
Query: 471 DPKK 482
K+
Sbjct: 451 GKKR 454
Score = 31.9 bits (69), Expect = 0.10
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESI----------NVKTDPNTGRSRG--FAFIVFK 407
++VG + +D+E+ HF YG++ESI K P G + F+ F
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVKFV 78
Query: 408 APESIDKVMA-AGEHTINNKKVDPKKAKARHGKI 506
ESI++V+ A T+ +K+ K K+
Sbjct: 79 NAESIEEVLKDAKGMTLGQRKLTIKARVVNPAKL 112
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 36.3 bits (80), Expect = 0.005
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 413
++VG + +E ++++ D F G ++S + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
Score = 31.1 bits (67), Expect = 0.18
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 644
++VG + E++++++ + F + G + ++ D Q KG+ F +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 35.1 bits (77), Expect = 0.011
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 501 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK-NQRKGFCFITFESEQ 656
+I+VGGLSS I ++ + FS FG++ +E+ T + F ++ F +++
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDE 58
Score = 31.9 bits (69), Expect = 0.10
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 261 KLFVGGLSWETTDKELRDHFGAYGEIESINV--KTDPNTGRSRGFAFIVFKAPE 416
+++VGGLS +L F +G + ++ + K+ P G + FA++ F+ E
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.3 bits (75), Expect = 0.019
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 501 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 650
KI++ L + +D++ FG +L ++ + KGFCF F++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
Score = 30.3 bits (65), Expect = 0.31
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +3
Query: 261 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 440
K+++ L + ++ + +G++ S + + G S+GF F FK P + ++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 441 --GEHTINNK 464
G+ T NK
Sbjct: 371 LDGKDTYGNK 380
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 34.3 bits (75), Expect = 0.019
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +3
Query: 456 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 635
+NKK + ++ +R +++ GL SD+ + + + FG + + D N KG+ F
Sbjct: 283 DNKKSN-MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF 341
Query: 636 ITFESEQ 656
FE E+
Sbjct: 342 ACFEEEK 348
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 32.7 bits (71), Expect = 0.057
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 477 KKAKARHGKIF-VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 644
+ AK+ G I V G+ E +++++ + F++FG + + + D+ KG+ I +
Sbjct: 2 RPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEY 58
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.9 bits (69), Expect = 0.10
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 300 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMAAGEHTINNKKVDP 476
++L + F +G I+S + + P+T S+G+ F+ F P E++ + K++
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 477 KKAKARHGK 503
A+ R +
Sbjct: 495 NYAEKREDR 503
Score = 27.9 bits (59), Expect = 1.6
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Frame = +3
Query: 432 MAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK 611
M A E K KK + I+VG L S ++ F FG + M + K
Sbjct: 1 MIALEKLSEKNKRSTKKCEI---SIYVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKK 56
Query: 612 NQRKG------FCFITFESE 653
N+ F FITFE++
Sbjct: 57 NKSTDSKSPTLFAFITFENK 76
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +3
Query: 504 IFVGGLSSEI--SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT----FESEQVVN 665
+FV L I + ++ FS+FG I + + KG+ F++ FE+ Q +N
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 666 DL 671
L
Sbjct: 481 TL 482
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 261 KLFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVFKAP 413
K+ V L + T+ ++++ F + G + +++ PN GRS+G A I+F P
Sbjct: 56 KIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 31.1 bits (67), Expect = 0.18
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 534 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 713
+++ IR+FFS+FG + +VE+ N C + F S + N+ +P+ + +
Sbjct: 255 NEENIRSFFSKFGVLEKVEL------NPTHHSCVLEFTSHEAANNAWSSPEPIFNNRFIK 308
Query: 714 V 716
+
Sbjct: 309 I 309
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 30.3 bits (65), Expect = 0.31
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +3
Query: 522 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 650
+ +++D +R+ +S FGT+ V + D +K ++ + I FE+
Sbjct: 176 ADQVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 30.3 bits (65), Expect = 0.31
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 368
+F+G L +KE+ + FG +G+IE I + + N
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEM 593
+F+G L S + EI F +FG I +++
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 29.9 bits (64), Expect = 0.40
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 443
LF+ G+ E D ++R HF YG ++S+ + R++ AF+ FK S + +AA
Sbjct: 214 LFLIGVEDELADYKIRKHFEQYGPLKSVVC-----SHRAK-CAFVNFKTRSSAE--IAAA 265
Query: 444 EHTINNKKVDPKKAKARHGK-IFVGGLSSEISDDEI 548
N ++ + K + GK +GG E+ + ++
Sbjct: 266 ASPDGNVVIEGFRLKVQWGKPRSLGGPEGEVRNAKL 301
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 29.9 bits (64), Expect = 0.40
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 510 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 689
V L ++ + ++ + F F I V M +D+ + +G C + FE+ Q D KT +
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPI-RVIMNYDRA-GRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 690 T-IGGKEVDV 716
T + G E+ +
Sbjct: 147 TNLKGSEIQI 156
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.94
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +3
Query: 468 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 629
+ P K +F+GG++ + + +R+ F FG++ + + N R GF
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLIL----NHNYRHGF 445
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 28.7 bits (61), Expect = 0.94
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +3
Query: 309 RDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 488
R++ GE+E V +P + ++F K+ A +++ +++DP K
Sbjct: 344 RENLLEVGEVEQSLVCNEPQSTDFNDIQRLLFSNISENTKLRLAALYSLRFERIDPAKVS 403
Query: 489 ARHGKIFVGGLS 524
A + GG++
Sbjct: 404 ALQQMLIAGGVN 415
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEM 593
+F+G L + I++DEIR FG I ++++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKI 237
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 368
+F+G L T+ E+R+ +G I+ I + T+ N
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 264 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 368
+++G T + L++ F +GEIE +N + N
Sbjct: 416 IYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 474 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 614
P++ + +GK L+S ++E+RN FSEF LE E+ F+ ++
Sbjct: 946 PEEIRKLNGKKI---LNSFFDNEELRNEFSEFIQHLESEVSFNSLRS 989
>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +3
Query: 558 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVXACNTKT 737
F G LE M D + G C +T+E + + L K I + V CN +
Sbjct: 19 FDVLGMSLEEYMTLDVEVSTESGPCVLTYEGDGKEHVSLDVQKNMITQTSLYVLRCNNIS 78
Query: 738 RWP 746
+P
Sbjct: 79 TFP 81
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 381 RGFAFIVFKAPESIDKVMAAGEHTINNKK 467
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 683
++V L I+ E+R++F FG IL ++ N + + +EQ +N++ P
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQV----NNNSGRIVFAQRYFAEQAINEMNNFP 233
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -1
Query: 488 FSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTLYFTV 327
F+LL L + GV Y ++ + H+ G P WICL+ +F +
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFII 138
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +3
Query: 501 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 674
++FVG + + + +++ +FF +G IL+ ++ GF F+ E + D++
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKL--------MNGFGFVEVEDARDARDIV 54
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 261 KLFVGGLSWETTDKELRDHFGAYGEI 338
+LFVG + + T +++ D F YG+I
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQI 30
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -1
Query: 524 AESSDKNLPMSCFSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYIN 345
++ L M C +++ F +F S ++V +GLK++ SA V I + N
Sbjct: 1191 SDEETTQLAMDCLAVMAKRFSASPELFISPIEVVSGPYGLKNSARDVQVSAIVCITVLTN 1250
Query: 344 TL 339
TL
Sbjct: 1251 TL 1252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,360
Number of Sequences: 5004
Number of extensions: 58613
Number of successful extensions: 254
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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