Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30o22
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    30   0.27 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    28   1.4  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    27   3.3  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    27   3.3  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    26   4.3  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   5.7  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    25   7.6  

>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +2

Query: 257 KVVXIYESFFRGEDLTTDNPTFWDEFFLLKPKIPQLEAEIHKLSTEQL-INMKE--SMNI 427
           K+V  Y+           N  FW EFFLL+P++  L   + +   ++L +N  +  SM +
Sbjct: 12  KIVFYYKCLLNKNWNEPINNIFWGEFFLLQPRLEVLSQLLRECPKQELTVNGPKFHSMYL 71

Query: 428 LVEQCIEMLRQDHHIR 475
            + + ++   +   IR
Sbjct: 72  YISEILKSKAESLRIR 87


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 448 FYTLFNQYIHTFFHVYQLFCGQFVYFCF-QLWYFWL 344
           F TLF ++    F V+Q+FC   V +C    WYF L
Sbjct: 189 FGTLFKEHAVAPFFVFQIFC--CVLWCLDDYWYFSL 222


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 448 FYTLFNQYIHTFFHVYQLFCGQFVYFCFQLWYFWLQKKEFIPKSRVIS 305
           FY+L   ++ TFFH  Q  C   +      W+F+   K    K+ ++S
Sbjct: 341 FYSLHFLWLCTFFHALQ--CA-IISSIVSQWFFYRDTKSSATKTNLVS 385


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 435 STNIFILSFMFISCSVDSLCISASSCGIFGFRRKNSS 325
           S  +F+ S +FI+C + +   S SS  IFG  R N S
Sbjct: 328 SIRLFLFSRLFINCGIQT---SLSSAVIFGKARLNLS 361


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 197 NFTMAMRKRSGSGSKRH--LKEKVVXIYESFFRGEDLTTDNPTFWDEFF 337
           + T+A+ +   + SK H  +  K++ I E + +  +   D+  FW +FF
Sbjct: 13  SITLALYEIDANFSKCHRTVTTKILPIVEKYAKNCNTIWDSSKFWKQFF 61


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 445 YTLFNQYIHTFFHVYQLFCGQF-VYFCFQLWYFWLQKKEFIPKSRVI 308
           Y+  +  I +F+   +++ G F VY  + L + W+   EF+P   ++
Sbjct: 572 YSFASIRISSFYSPAKVWGGAFLVYILYSLAHVWVVAYEFVPGGPIL 618


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 406 VYQLFCGQ-FVYFCFQLWYFWLQKKEFIPKSRVISR*VLSSKERFINXYNLL 254
           V  L C Q FV+  F L  +    KE + ++++ +  + + K+  +  YN+L
Sbjct: 57  VTSLRCLQLFVHLTFLLGVYTQLPKEMLSQAKIKALPIYTPKKNLVQIYNIL 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,209
Number of Sequences: 5004
Number of extensions: 47565
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)