Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30o16
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 35 0.015
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 34 0.020
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 34 0.026
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 31 0.24
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 29 0.74
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 28 1.7
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 26 5.2
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 26 5.2
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo... 26 6.9
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 9.1
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 25 9.1
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 34.7 bits (76), Expect = 0.015
Identities = 25/110 (22%), Positives = 56/110 (50%)
Frame = +3
Query: 27 SATNLEVLDLSKTDIDSIPLDAFRGLVKLQQIDLSDNHFVTVPESLSLVGSTLKYLTFNN 206
S +NL D+S + + LV ++ + ++ NHF ++ +++S + LKYL+ N
Sbjct: 657 SYSNLVYFDISHAKLIGLKDSVIETLVNVETVKVNYNHFTSISDAISAM-QNLKYLSCTN 715
Query: 207 NPVVELNDDSFVGLSNVIELEVGENDYLDEVKRGTFTPLKSLKVLHLCHN 356
+ ++ + L +++ L++ N+ ++ + SLKV++L N
Sbjct: 716 CEMSYVS-PNLGKLKHLVHLDLHANNI--KIFPEEVWQVSSLKVVNLSSN 762
Score = 34.3 bits (75), Expect = 0.020
Identities = 30/110 (27%), Positives = 59/110 (53%)
Frame = +3
Query: 27 SATNLEVLDLSKTDIDSIPLDAFRGLVKLQQIDLSDNHFVTVPESLSLVGSTLKYLTFNN 206
S +L+ L+++ + +P + R LV L +DLS N+FVT P ++ + S L+ L F++
Sbjct: 500 SRNSLKELNIANNKLFFLP-HSTRYLVNLTYLDLSYNNFVTFPLIITEL-SQLETLNFSH 557
Query: 207 NPVVELNDDSFVGLSNVIELEVGENDYLDEVKRGTFTPLKSLKVLHLCHN 356
N + +++ L + L + ND + + + LK+L+ + L +N
Sbjct: 558 NLLSQIS-SKIGSLVKLKHLYLQFNDLSNRLPQ-EIGLLKNLETIDLSYN 605
Score = 31.9 bits (69), Expect = 0.10
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +3
Query: 78 IPLDAFRGLVKLQQIDLSDNHFVTVPESLSLVG-STLKYLTFNNNPVVELNDDSFVGLS- 251
+PLD VKL+++D+S+N + P + L+ L + N + EL+ F GLS
Sbjct: 444 LPLDFMERCVKLKRLDISNN--LRSPRGKPITALRQLEVLNMSRNDIYELDPLIFSGLSR 501
Query: 252 -NVIELEVGEN 281
++ EL + N
Sbjct: 502 NSLKELNIANN 512
Score = 28.7 bits (61), Expect = 0.97
Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 4/158 (2%)
Frame = +3
Query: 48 LDLSKTDIDSIPLDAFRGLVKLQQIDLSDNHFVTVPESLSLVGSTLKYLTFNNNPVVELN 227
LD+S+++++ IP+ + +L +++S N + +P LK L +NN +
Sbjct: 410 LDISRSNLEVIPVKIYPYAHELISLNVSHNLSLDLPLDFMERCVKLKRLDISNN-LRSPR 468
Query: 228 DDSFVGLSNVIELEVGENDYLDEVKRGTFTPL--KSLKVLHLCHNRNLRYISHNAFRGLK 401
L + L + ND + E+ F+ L SLK L++ +N+ L ++ H+
Sbjct: 469 GKPITALRQLEVLNMSRND-IYELDPLIFSGLSRNSLKELNIANNK-LFFLPHST----- 521
Query: 402 DKWTLKEVYLD--DNNLSELSPDLMPWSKLDVLGMTGN 509
++ + YLD NN + S+L+ L + N
Sbjct: 522 -RYLVNLTYLDLSYNNFVTFPLIITELSQLETLNFSHN 558
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 34.3 bits (75), Expect = 0.020
Identities = 18/61 (29%), Positives = 35/61 (57%)
Frame = +3
Query: 36 NLEVLDLSKTDIDSIPLDAFRGLVKLQQIDLSDNHFVTVPESLSLVGSTLKYLTFNNNPV 215
+LE+LD+S+ I +P ++F L+ L+ + +S N +P ++ + L+ L NN +
Sbjct: 99 SLEILDISRNKIKQLP-ESFGALMNLKVLSISKNRLFELPTYIAHM-PNLEILKIENNHI 156
Query: 216 V 218
V
Sbjct: 157 V 157
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 33.9 bits (74), Expect = 0.026
Identities = 26/91 (28%), Positives = 41/91 (45%)
Frame = +3
Query: 9 SILAISSATNLEVLDLSKTDIDSIPLDAFRGLVKLQQIDLSDNHFVTVPESLSLVGSTLK 188
+IL+ SS + L L S + SIP + F L L +DLS N +P +L + L
Sbjct: 324 AILSSSSWSQLLYLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEIPYALGEL-PQLC 382
Query: 189 YLTFNNNPVVELNDDSFVGLSNVIELEVGEN 281
L +N + + LS++ L + N
Sbjct: 383 SLNLASNKITGCRTFYHISLSHLQILVLSRN 413
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 30.7 bits (66), Expect = 0.24
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 414 LKEVYLDDNNLSELSPDLMPWSKLDVLGMTGNS 512
L E+Y++ NNL+ L P++ L +L +GNS
Sbjct: 183 LTELYINHNNLTRLPPEIGKLKNLVILDASGNS 215
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 29.1 bits (62), Expect = 0.74
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 156 ESLSLVGSTLKYLTFNNNPVVELNDDSFVGLSNVIELE 269
ES +L+ +TLK L N ++E S++ LS V+E E
Sbjct: 617 ESKALIFNTLKILAVENTAILETVILSWISLSRVVEEE 654
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 27.9 bits (59), Expect = 1.7
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 3/133 (2%)
Frame = +3
Query: 39 LEVLDLSKTDIDSIPLDAFRGLVKLQQIDLSDNHFVTVPESLSLVGSTLKYLTFNNNPVV 218
LE+L+L + + ++ D V L + N V + + +T N V
Sbjct: 403 LELLELVQYALSNVDSDEIPSNVMLS---VCTNLINEVASQNKYSSTEISQIT-TNREVE 458
Query: 219 ELNDDSFVGLSNVIELEVGENDYLDEVKRGTFTPLKSLKVLHLCHNRNLRYISHNAFRGL 398
E N++ + L N+I +G N LD ++ + L +L+ L NR + ++ + ++ L
Sbjct: 459 EENEEILLVLLNIISSVIGRNAELD-LENPISSLLPALEQLSNYSNREISDLAKDVYKTL 517
Query: 399 ---KDKWTLKEVY 428
KD ++L Y
Sbjct: 518 IQSKDDYSLALSY 530
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 12 ILAISSATNLEVLDLSKTDI--DSIPLDAFRGLVKLQQIDLSDNHFVTVPESLSL 170
++ + N E +DL++ I + IPL+ V+ + + D F+ V ESLSL
Sbjct: 184 VVMLPDTFNSETIDLAEVLIGAEGIPLEFLSEFVQRFEHENLDELFIPVLESLSL 238
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 623 IHYKYYYQLLSNVRQDIFT*EDF*FIRFEAKTC 721
I Y+++ +L+ QD F+ EDF +R K C
Sbjct: 647 IDYQHFIELIDLHVQDEFSKEDFDTVRANVKEC 679
>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 354 CDINAGPSSFSKV 316
CD+ GPSSF KV
Sbjct: 186 CDVEVGPSSFEKV 198
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 390 RGLKDKWTLKEVYLDDNNLSE 452
RGLKD++ L ++Y D N +
Sbjct: 208 RGLKDEFVLVKIYATDKNFEQ 228
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 9.1
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 27 SATNLEVLDLSKTDIDSIPLDAFRGLVKLQQIDLSDNHFVTVPESLSLVGS 179
S+T +V + ID+ LD +++ SDNH VTV SLS G+
Sbjct: 301 SSTFSDVFVSNGDKIDTFSLDEAAN-IQIPIQSTSDNHTVTVDRSLSNDGN 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,227,304
Number of Sequences: 5004
Number of extensions: 68323
Number of successful extensions: 179
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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