Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30o14
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 55 9e-09
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 51 2e-07
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 48 1e-06
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 47 3e-06
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 46 6e-06
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 43 5e-05
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 43 5e-05
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 41 2e-04
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce... 40 4e-04
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 38 0.001
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 36 0.006
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 36 0.006
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 28 1.2
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 27 2.2
SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces... 27 3.8
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 26 5.0
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo... 26 6.6
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 25 8.7
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 8.7
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 55.2 bits (127), Expect = 9e-09
Identities = 55/222 (24%), Positives = 92/222 (41%), Gaps = 11/222 (4%)
Frame = +3
Query: 66 SWKFLMKSKSSQRXXXXXXXXXXXXXXXGCVVLQVYAEPLFKEAVPSMPPNQCAILLAVD 245
S K L S++R G +Q ++ +F ++V +I++
Sbjct: 319 SLKVLFTVPSNRRSLFIGCFLQWFQQFSGTNAIQYFSAIIF-QSVGFKNSISVSIVVGAT 377
Query: 246 FLIASLVCVFIIDKFGRKPLLIVTAAISGVCMFLLGLQLQTHFAPH---------WFTVL 398
+ ++V ID+ GR+ +L+ T+A+ + L + HF P W V+
Sbjct: 378 NFVFTIVAFMFIDRIGRRRILLCTSAVMIAGLALCAIAY--HFLPADTTQNTNSGWQYVV 435
Query: 399 IIYTYSFV--YMLGCAAIPFVLSAELFLPEVRSLCNSITMVCLWSVNFVTLLVFKPLAEW 572
+ F+ Y G IP+ AELF EVR+L + W N + F + E
Sbjct: 436 LASIIIFLASYASGIGNIPWQ-QAELFPMEVRALGAGFSTAINWVGNLIISASFLTMMES 494
Query: 573 LGLGIVFYCFSMFSFVGVLFGYAYIPETKGLSVDAIQLLFLK 698
+ F F+ F FVG++ Y PE G+S++ I L K
Sbjct: 495 ITPTGTFALFAGFCFVGLVTSYFTYPELAGMSIENIHKLLEK 536
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 50.8 bits (116), Expect = 2e-07
Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 12/187 (6%)
Frame = +3
Query: 171 YAEPLFKEAVPSMPPNQCAILLAVDFLIASLVCVFIIDKFGRKPLLIVTAAISGVCMFLL 350
YA +FK + IL A++F + ++ ID GR+ LI AA +C F+
Sbjct: 287 YATQVFKGTGMTDIFLPAVILGAINFG-TTFGALYTIDNLGRRNPLIFGAAFQSICFFIY 345
Query: 351 G------LQLQTHFAPHWF-TVLIIYTYSFVYMLGCAAIP--FVLSAELFLPEVRSLCNS 503
L + + H +V+I+++ F++ C+ P +V+ E F RS C S
Sbjct: 346 AAVGDRKLIYKNGTSDHRAGSVMIVFSCLFLFSYCCSWGPMGWVIVGETFPIRYRSKCAS 405
Query: 504 ITMVCLWSVNFVTLLVFKPL---AEWLGLGIVFYCFSMFSFVGVLFGYAYIPETKGLSVD 674
+ W NF+ + F P A LG ++ C ++FS + F ETKGL+++
Sbjct: 406 VATSGNWLGNFM-ISFFTPFINNAIGFKLGYIYACINLFSSFMIFF---LAKETKGLTLE 461
Query: 675 AIQLLFL 695
+ L++
Sbjct: 462 EVNDLYM 468
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 48.4 bits (110), Expect = 1e-06
Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 10/185 (5%)
Frame = +3
Query: 171 YAEPLFKEAVPSMPPNQCAILLAVDFLIASLVCVFIIDKFGRKPLLIVTAAISGVCMFLL 350
Y +F+ + P IL AV+F + +F+++ FGR+ LIV +C F+
Sbjct: 289 YGTQVFRGTGLNSPFLAALILDAVNFG-CTFGAIFVLEYFGRRGPLIVGGVWQSICFFIY 347
Query: 351 ------GLQLQTHFAPHWF-TVLIIYTYSFVYMLGCAAIP--FVLSAELFLPEVRSLCNS 503
L + H V+I+++ F++ P +V+ E + RS C +
Sbjct: 348 ASVGDRALTRPNGTSNHRAGAVMIVFSCLFIFSFAQTWAPAAYVIVGESYPIRYRSKCAA 407
Query: 504 ITMVCLWSVNFVTLLVFKPLAEWLGLGIVF-YCFSMFSFVGVLFGYAYIPETKGLSVDAI 680
+ W NF+ + F P +G + Y F+ + + + + ETKGL+++ I
Sbjct: 408 VATASNWFWNFM-ISFFTPFIS-NSIGFKYGYVFAACNLCAAIIIFLFAKETKGLTLEEI 465
Query: 681 QLLFL 695
L+L
Sbjct: 466 NQLYL 470
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 46.8 bits (106), Expect = 3e-06
Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 11/185 (5%)
Frame = +3
Query: 171 YAEPLFKEAVPSMPPNQCAILLAVDFLIASLVCVFIIDKFGRKPLLIVTAAISGVCMFLL 350
YA +FK + IL A++F + ++ ID GR+ LI AA +C F+
Sbjct: 287 YATQVFKGTGMTDIFLPAVILGAINFG-TTFGALYTIDNLGRRNPLIFGAAFQSICFFIY 345
Query: 351 G------LQLQTHFAPHWF-TVLIIYTYSFVYMLGCAAIP--FVLSAELFLPEVRSLCNS 503
L + + H V+I+++ F++ C+ P +V+ E F RS C +
Sbjct: 346 AAVGDRKLIYKNGTSDHRAGAVMIVFSCLFLFSYCCSWGPMGWVIVGETFPIRYRSKCAA 405
Query: 504 ITMVCLWSVNFVTLLVFKPLAEWLG--LGIVFYCFSMFSFVGVLFGYAYIPETKGLSVDA 677
+ W NF+ ++ +G LG ++ C +M S + + ETKGL+++
Sbjct: 406 VATSGNWLGNFMVSFFTPFISNSIGFKLGYIYACINMTSAFQI---FLMAKETKGLTLEE 462
Query: 678 IQLLF 692
+ L+
Sbjct: 463 VNELY 467
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 46.0 bits (104), Expect = 6e-06
Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 10/152 (6%)
Frame = +3
Query: 270 VFIIDKFGRKPLLIVTAAISGVCMFL---LGLQLQTHFAPHWFT----VLIIYTYSFVYM 428
++++++FGR+ LI+ +C F+ +G + H T V+I+ F++
Sbjct: 323 MYVLERFGRRNPLIIGGIWQSICFFIYSAVGSRALYHKNGTSNTRAGAVMIVMACLFIFG 382
Query: 429 LGCAAIP--FVLSAELFLPEVRSLCNSITMVCLWSVNFVTLLVFKPLAEWLGLGIVF-YC 599
P +V+ E + RS C ++ W NF+ + F P + +G + Y
Sbjct: 383 FAQTWAPAAYVIVGESYPVRYRSKCAAVATASNWLWNFL-ISFFTPFIQ-ASIGFKYGYV 440
Query: 600 FSMFSFVGVLFGYAYIPETKGLSVDAIQLLFL 695
F+ + G + + + ETKGL+++ I L++
Sbjct: 441 FASCNLTGAIVIFLFAKETKGLTLEEINELYM 472
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 42.7 bits (96), Expect = 5e-05
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 10/192 (5%)
Frame = +3
Query: 150 GCVVLQVYAEPLFKEAVPSMPPNQCAILLAVDFLIASLVCVFIIDKFGRKPLLIVTAAIS 329
GC Y +FK P IL AV+F + +F+++ GR+ LI+
Sbjct: 280 GCNYYFYYGTQVFKGTGMESPYLASLILDAVNFG-CTFGGLFVLEYCGRRVPLIIGGVWQ 338
Query: 330 GVCMFLLG------LQLQTHFAPHWF-TVLIIYTYSFVYMLGCAAIP--FVLSAELFLPE 482
+C F+ L + + H V+I+++ F++ P +V+ E +
Sbjct: 339 SICFFIYAAVGNRALTRKNGTSNHRAGAVMIVFSCLFIFSFAQTWGPAAYVIVGESYPIR 398
Query: 483 VRSLCNSITMVCLWSVNFVTLLVFKPLAEWLGLGIVF-YCFSMFSFVGVLFGYAYIPETK 659
RS C ++ W NF+ + F P +G + Y F+ + + + + E+K
Sbjct: 399 YRSKCAAVATTSNWLWNFL-ISFFTPFIT-NSIGFKYGYIFASCNLCASIVTFLFAHESK 456
Query: 660 GLSVDAIQLLFL 695
GL+++ I L+L
Sbjct: 457 GLTLEEINELYL 468
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 42.7 bits (96), Expect = 5e-05
Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 10/151 (6%)
Frame = +3
Query: 270 VFIIDKFGRKPLLIVTAAISGVCMFLL------GLQLQTHFAPHWF-TVLIIYTYSFVYM 428
+F+++ FGR+ LIV +C F+ L + + H V+I+++ F++
Sbjct: 289 IFVLEFFGRRSPLIVGGIWQYICFFIYAAVGDRALYHKNGTSNHRAGAVMIVFSCLFIFS 348
Query: 429 LGCAAIP--FVLSAELFLPEVRSLCNSITMVCLWSVNFVTLLVFKPLAEWLGLGIVF-YC 599
P +V+ E + RS C ++ W NF+ + F P +G + Y
Sbjct: 349 FSQTWAPAAYVIVGESYPVRYRSKCAAVATSANWFWNFL-ISFFTPFIT-NSIGFKYGYI 406
Query: 600 FSMFSFVGVLFGYAYIPETKGLSVDAIQLLF 692
F+ + G + ++ ETKG +++ I ++
Sbjct: 407 FASCNLTGAAIIFLFVHETKGRTLEEINTMY 437
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 41.1 bits (92), Expect = 2e-04
Identities = 36/137 (26%), Positives = 57/137 (41%)
Frame = +3
Query: 270 VFIIDKFGRKPLLIVTAAISGVCMFLLGLQLQTHFAPHWFTVLIIYTYSFVYMLGCAAIP 449
VF+++K GRK + + I+G+ +L T F +I F G A
Sbjct: 400 VFLVEKLGRKWIQLQGLFITGLMFAILAGSWDTISTGGRFACFVI--AQFFSNFGPNATT 457
Query: 450 FVLSAELFLPEVRSLCNSITMVCLWSVNFVTLLVFKPLAEWLGLGIVFYCFSMFSFVGVL 629
F+ AE+F VR + ++ + L+F L +G G V + F + G +
Sbjct: 458 FLYPAEVFPARVRGTAHGLSAALGKCGAILASLLFNFLTSVIGYGNVMWIFCGCMW-GAI 516
Query: 630 FGYAYIPETKGLSVDAI 680
F +PETK D I
Sbjct: 517 FFTLLLPETKMRDADEI 533
>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 583
Score = 39.9 bits (89), Expect = 4e-04
Identities = 38/154 (24%), Positives = 63/154 (40%)
Frame = +3
Query: 228 ILLAVDFLIASLVCVFIIDKFGRKPLLIVTAAISGVCMFLLGLQLQTHFAPHWFTVLIIY 407
I+ ++ V V +I+ GRK + I I + +L +T F + +
Sbjct: 407 IIAVAGYIPGYWVSVVLIEVMGRKWIQIQGFLICCLLFGVLAGTWETISTGGRFACVALA 466
Query: 408 TYSFVYMLGCAAIPFVLSAELFLPEVRSLCNSITMVCLWSVNFVTLLVFKPLAEWLGLGI 587
+ F + G FV+ AE+F VR+ + I C + ++ L+F L E +G G
Sbjct: 467 QFFFNF--GPNTTCFVIPAEVFPSRVRAFSHGICAACGKAGAILSALLFNKLTEVIGFGN 524
Query: 588 VFYCFSMFSFVGVLFGYAYIPETKGLSVDAIQLL 689
V + F G + +PET D I L
Sbjct: 525 VLWIFFGCMVAGAVV-TLILPETANRDADLIDRL 557
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 38.3 bits (85), Expect = 0.001
Identities = 51/225 (22%), Positives = 87/225 (38%), Gaps = 15/225 (6%)
Frame = +3
Query: 51 QKPTSSWKFLMKSKSSQRXXXXXXXXXXXXXXXGCVVLQVYAEPLFKEAVPSMPPNQCAI 230
QK ++K L + S+ R G L ++ +F E V P +
Sbjct: 320 QKIVKTFKELYFNPSNFRALILACGLQAMQQLSGFNSLMYFSSTIF-EVVGFNNPTATGL 378
Query: 231 LLAVDFLIASLVCVFIIDKFGRKPLLIVTAAISGVCMFLLGLQLQTHFAPH--------- 383
++A + ++V +ID FGR+ LL++T + G+ L+ + HF P
Sbjct: 379 IIAATNFVFTIVAFGVIDFFGRRILLLLT--VWGMIAALIVCAVAFHFLPKDENGNYTSG 436
Query: 384 ----WFTVLIIYTYSFV--YMLGCAAIPFVLSAELFLPEVRSLCNSITMVCLWSVNFVTL 545
W V++I +V Y G +P+ S ELF VR L ++ W+ N
Sbjct: 437 QSNAWAIVVLISMIVYVASYASGLGNLPWQQS-ELFPMSVRGLGTGMSTAVNWAGNLGIG 495
Query: 546 LVFKPLAEWLGLGIVFYCFSMFSFVGVLFGYAYIPETKGLSVDAI 680
F L + F + F+G L P+ +++ I
Sbjct: 496 ASFLTLMSEITPTGTFALYGGLCFLGWLGALFCYPDLTDYTIEEI 540
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 35.9 bits (79), Expect = 0.006
Identities = 41/185 (22%), Positives = 80/185 (43%), Gaps = 10/185 (5%)
Frame = +3
Query: 171 YAEPLFKEAVPSMPPNQCAILLAVDFLIASLVCVFIIDKFGRKPLLIVTAAISGVCMFLL 350
Y +F+ + P IL AV+F + +F+++ FGR+ LI+ A + F+
Sbjct: 287 YGFEVFEGTGMNSPYLSALILDAVNFG-CTFGGLFVLEFFGRRMPLIIGALWQSITFFIY 345
Query: 351 G------LQLQTHFAPHWF-TVLIIYTYSFVYMLGCAAIP--FVLSAELFLPEVRSLCNS 503
L + + H V+I+++ F++ P +V+ E + RS C +
Sbjct: 346 AAVGNRALTRKNGTSNHRAGAVMIVFSCLFIFSFAQTWGPAAYVIVGESYPIRYRSKCAA 405
Query: 504 ITMVCLWSVNFVTLLVFKPLAEWLGLGIVF-YCFSMFSFVGVLFGYAYIPETKGLSVDAI 680
+ W F+ + F P +G + Y F+ + + + ETKGL+++ I
Sbjct: 406 VATTGNWLWGFL-ISFFTPFIT-NSIGFKYGYIFAACNLCAACIIFLFAHETKGLTLEEI 463
Query: 681 QLLFL 695
L++
Sbjct: 464 NELYI 468
>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 547
Score = 35.9 bits (79), Expect = 0.006
Identities = 39/184 (21%), Positives = 78/184 (42%), Gaps = 9/184 (4%)
Frame = +3
Query: 171 YAEPLFKEAVPSMPPNQCAILLAVDFLIASLVCVFIIDKFGRKPLLIVTAAISGVCMFLL 350
Y +F+ + P IL AV+F + +F+++ FGR+ LI+ + F+
Sbjct: 287 YGFEVFEGTGMNSPYLSALILDAVNFG-CTFGGLFVLEFFGRRMPLIIGGVWQSITFFIY 345
Query: 351 G------LQLQTHFAPHWF-TVLIIYTYSFVYMLGCAAIP--FVLSAELFLPEVRSLCNS 503
L + + H V+I+++ F++ P +V+ E + RS C +
Sbjct: 346 AAVGNRALTRKNGTSNHRAGAVMIVFSCLFIFSFAQTWGPAAYVIVGESYPIRYRSKCAA 405
Query: 504 ITMVCLWSVNFVTLLVFKPLAEWLGLGIVFYCFSMFSFVGVLFGYAYIPETKGLSVDAIQ 683
+ W F+ +++ +G Y F+ + + + ETKGL+++ I
Sbjct: 406 VATTGNWLWGFLITFFTPFISDSIGFKYG-YIFAACNLCAACIIFLFAHETKGLTLEEIN 464
Query: 684 LLFL 695
L+L
Sbjct: 465 ELYL 468
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 303 LLIVTAAISGVCMFLLGLQLQTHFAPHWFT-VLIIYTYSFVYMLGCAAIPFVLSAELFL 476
L I TA IS VC +LG P +T VL+ Y F+ + + I + +F+
Sbjct: 125 LEIATAIISSVCKPILGKFSDITSRPMTYTLVLLFYVIGFIVVASSSTISAYVIGSVFI 183
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 537 VTLLVFKPLAEWLGLGIVFYCFSMFSFVGVLFGYAYIPETKGLSVDAIQLLFLK 698
V +++F+ L ++ G + F F++FS +G+ +I G+S+ I L LK
Sbjct: 205 VAIVMFETLQQFQGKTLHF--FTLFSGIGIFIITFFISLLIGVSIGLITALLLK 256
>SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 252
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 605 NVQFRGSFIWLRIHTGDERFISGRD 679
N QFR +F+ L + G + F+SG D
Sbjct: 59 NSQFRNTFVKLALKIGLDPFVSGSD 83
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = +3
Query: 381 HWFTVLIIYTYSFVYMLGCAAIPFVLSAELFLPEVRSL 494
HW T+L + +S ++L A + F + +P + ++
Sbjct: 13 HWVTILAVILFSIAFILHVACLAFTRKWLVIVPIIGTI 50
>SPCC553.12c ||SPCC794.13|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 521
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 303 LLIVTAAISGVCMFLLGLQLQTHFAPHWFTVLIIYTYSF 419
+L+VT + V +L L + T PH TV I+Y YS+
Sbjct: 269 VLLVTLLVYIVGEYLTNLYMST--LPHSSTVAIMYVYSW 305
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -3
Query: 562 SGLNTRRVTKLTDQRQTIVMLLQRLLTSGKKSSALNTNGIAAQPSM*TKLYV 407
S LN R K ++ +T L + + KKS+ N NGIAA + T+ ++
Sbjct: 284 SHLNLSR--KNSEVSKTCKCLQKETIRCNKKSNCYNWNGIAALETYTTECHI 333
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 523 GRSIL*LFWCSSRWRNG 573
G+S L FWCS+ W G
Sbjct: 401 GKSYLHCFWCSASWLAG 417
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,008
Number of Sequences: 5004
Number of extensions: 65797
Number of successful extensions: 184
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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