Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30o13
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0345 - 28142434-28142658,28143087-28143158,28143252-281433... 137 8e-33
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 31 1.3
10_08_0444 + 17971724-17971797,17972119-17972176,17972613-179727... 29 5.2
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292... 29 5.2
10_07_0060 - 12481431-12481545,12481641-12481753,12482002-124823... 28 6.9
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850... 28 6.9
02_02_0285 + 8582033-8582201,8582375-8582652,8582762-8583394 28 9.2
01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334... 28 9.2
>02_05_0345 -
28142434-28142658,28143087-28143158,28143252-28143371,
28143483-28143674,28144919-28145017,28145448-28145594,
28146310-28146513
Length = 352
Score = 137 bits (332), Expect = 8e-33
Identities = 63/138 (45%), Positives = 92/138 (66%)
Frame = +2
Query: 296 KIGTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRY 475
++GTH+G FHCDE L C++++ Q+ A+++RTRD L+ D V+DVG V+D + RY
Sbjct: 31 RVGTHNGSFHCDEALGCYLIRLTSQFAGADVVRTRDPQILDTLDAVLDVGGVYDPSRHRY 90
Query: 476 DHHQAGFNETLSTLRPELGGSYKIKLSSAGLVYAYYGEDIIQQLKEESTSLTNEDLKLIY 655
DHHQ GFNE G + KLSSAGLVY ++G++II KE S +ED+ +Y
Sbjct: 91 DHHQKGFNEV-------FGHGFNTKLSSAGLVYKHFGKEII--AKELEVSEDHEDVHRLY 141
Query: 656 KKVYESFIQEIDAIDNGI 709
+Y+SF++ +DA+DNGI
Sbjct: 142 LAIYKSFVEALDAVDNGI 159
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 410 KLNDCDIVVDVGSVFDHEKKRYDHHQAGFNETLSTLRPELGGSYKI 547
K + D + +VG+ HE + H A +TLS + P+ G + K+
Sbjct: 2668 KASQEDALEEVGTELPHESLHENRHGAKDEQTLSLIEPDTGNAEKL 2713
>10_08_0444 +
17971724-17971797,17972119-17972176,17972613-17972708,
17972974-17973000,17973019-17973075,17973604-17973687,
17974304-17974384,17974928-17975071,17975218-17975309,
17975998-17976079,17976818-17977000,17977360-17977438,
17977555-17977613,17978162-17978290,17979188-17979367,
17980312-17980446,17980528-17980602,17980890-17980947,
17981035-17981282,17981594-17981733,17981961-17982132,
17982797-17982887,17983099-17983221,17984951-17985032,
17985715-17985835,17985886-17985915,17986427-17986549
Length = 940
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 317 VFHCDEVLACF-MLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYDHHQAG 493
+ H + V +C +L + K A + D N+L++C ++ GS + Y HQ
Sbjct: 597 LMHNEVVTSCSNLLAGMEILKAAMVQLLNDYNRLSECVKIIPGGSTLNRNLPYYGVHQVH 656
Query: 494 F 496
F
Sbjct: 657 F 657
>02_01_0401 +
2927581-2927669,2927795-2927921,2928354-2928437,
2928546-2928662,2928754-2928945,2929031-2929234,
2929322-2929809,2930429-2930528,2930686-2930745,
2931007-2931126,2931407-2931751
Length = 641
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 660 KFMNLSFKRLMLLITEFPMTEEQPKYDI 743
K +L K LML + +F +TEE KY I
Sbjct: 480 KLFSLMQKSLMLALNKFKITEEHKKYSI 507
>10_07_0060 -
12481431-12481545,12481641-12481753,12482002-12482317,
12482595-12482596,12482735-12482833,12483014-12483089,
12484230-12484297
Length = 262
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Frame = +2
Query: 608 KEESTSLTNEDL-KLIYKKVYES-----FIQEIDAIDNGIPNDR 721
+ E TSL EDL ++I KK ES + + ID I+NG+ ND+
Sbjct: 35 RTEPTSLEIEDLVEVIEKKPRESLQRVQYAKAIDHINNGLSNDK 78
>07_03_1591 +
27967065-27967090,27967236-27968054,27984940-27985022,
27985590-27985744,27985956-27986461,27986551-27986703,
27987146-27987485,27987558-27987822,27987897-27988634,
27989734-27989779,27989849-27990223,27991511-27991567,
27991640-27992438
Length = 1453
Score = 28.3 bits (60), Expect = 6.9
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = +2
Query: 302 GTHDGVFHCDEVLACFMLKNLPQYKDAEIIRTRDLNKLNDCDIVVDVGSVFDHEKKRYDH 481
G+H+GV V AC M N P+ KD R +KL + ++V VG VFD ++ YD
Sbjct: 334 GSHEGVDRPPCVQACEM--NTPE-KDRVY---RHDSKLRE-EMVPKVGMVFDSYEEAYDF 386
Query: 482 HQ-----AGFNETLSTLRP 523
++ AGF+ S +P
Sbjct: 387 YERYSYHAGFDIKKSRNKP 405
>02_02_0285 + 8582033-8582201,8582375-8582652,8582762-8583394
Length = 359
Score = 27.9 bits (59), Expect = 9.2
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +2
Query: 320 FH-CDEVLACFMLKNLPQYK--DAEIIRTRDLNKLNDCDIV--VDVGSVFDHEKKRYDHH 484
FH DE L + L+ Y+ D ++IR DLNKL D+ +G+ E + H
Sbjct: 16 FHPTDEELLYYYLRKKVAYEAIDLDVIREIDLNKLEPWDLKDRCRIGTGAQEEWYFFSHK 75
Query: 485 QAGFNETLSTLRPELGGSYK 544
+ T R + G +K
Sbjct: 76 DKKYPTGTRTNRATVAGFWK 95
>01_06_1796 -
39932487-39932633,39933150-39933201,39933370-39933495,
39933645-39933743,39934039-39934258,39934599-39934764,
39935108-39935161,39935527-39935657,39935747-39935818,
39936524-39936602,39936705-39936783,39936868-39936902,
39936986-39937111
Length = 461
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 52 SSKPKFGEQQRKDHEKK 2
S+KP FG+ RKDH K+
Sbjct: 356 SAKPPFGKANRKDHRKR 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,664,093
Number of Sequences: 37544
Number of extensions: 308996
Number of successful extensions: 617
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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