Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30o13
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    24   1.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   7.1  

>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = +2

Query: 191 ITYVMLNRILPRTCSLLNSASYNFRRYCLSSIL---KMKIGTHDGVFHCDEVLACF 349
           +T+V L  +   +   +   + N R+ CL  I    ++  G   G F  D  L C+
Sbjct: 13  VTFVALKPVKSMSADQVEKLAKNMRKSCLQKIAITEELVDGMRRGEFPDDHDLQCY 68


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 317 LRREFQSSSLKYLTNSNDENYMMQN 243
           L R    SSL   TN+ND++Y  QN
Sbjct: 356 LERSRSWSSLDN-TNTNDQDYSSQN 379


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,798
Number of Sequences: 438
Number of extensions: 4030
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)