Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30o11
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    87   6e-19
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    86   1e-18
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    32   0.017
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    25   2.6  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    25   3.5  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    25   3.5  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    24   6.1  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    24   6.1  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    23   8.1  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 87.0 bits (206), Expect = 6e-19
 Identities = 47/94 (50%), Positives = 60/94 (63%)
 Frame = +3

Query: 3   YESHYTLPLGRKKGAKLTEAXEAIIXKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLL 182
           YE+HY + +G  KG K T          +S+   RK+ AR   +KV+ ALE QF  GRL 
Sbjct: 113 YETHYGILMG-SKGKKATSTPNP-----KSKHVQRKHSARLGDSKVDSALETQFAAGRLY 166

Query: 183 ACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 284
           A V+SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 167 AVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 86.2 bits (204), Expect = 1e-18
 Identities = 47/94 (50%), Positives = 60/94 (63%)
 Frame = +3

Query: 3   YESHYTLPLGRKKGAKLTEAXEAIIXKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLL 182
           YE+HY + +G  KG K T          +S+   RK+ AR   +KV+ ALE QF  GRL 
Sbjct: 113 YETHYGILMG-SKGKKATATPTP-----KSKHVQRKHSARLGDSKVDSALETQFAAGRLY 166

Query: 183 ACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 284
           A V+SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 167 AVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 32.3 bits (70), Expect = 0.017
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 261 DRTRVLCLLRCNHRRDHTDLGDSPRKPANALCGIALLE 148
           D   + CLLR  H+RD  +  +  RK  N L G  LLE
Sbjct: 434 DANIIPCLLRSKHKRDKANPENKERKLVNNLLGAQLLE 471


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 230 VTIGATTLTWATRHASQ-QTPCVELLF*STLNLSKTLPCQ 114
           +T+G T+L+W+ RH+ +  + C E  +    N +K  P +
Sbjct: 329 LTLGGTSLSWSWRHSGRIVSACQEYCY--VWNFNKANPLE 366


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 223 SARPH*PGRLATQASKRPVWNCSSRAPSTLARRC 122
           S +PH P +  T+   +P  +  S   S LAR+C
Sbjct: 154 SEQPHTPCKKGTKIKLKPPQSPLSPTTSLLARKC 187


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 75  IXKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGK 245
           +  K  +K A + L RQ+  K   A EE+    RLL       G+ GR    ++ GK
Sbjct: 188 LHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLL------QGKGGRQKKKVVNGK 238


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 15  YTLPLGRKKGAKLTE 59
           Y LPLGRK   K TE
Sbjct: 492 YILPLGRKTARKCTE 506


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 207 QCGRADGYILEGKELEFYLRKIKSK 281
           Q GR+ GY L   E E YL  I +K
Sbjct: 83  QLGRSRGYALYSDENEKYLWSINTK 107


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 181 SKRPVWNCSSRAPS 140
           SK P WN  SR P+
Sbjct: 843 SKTPAWNSGSRTPA 856


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 916,199
Number of Sequences: 5004
Number of extensions: 13188
Number of successful extensions: 40
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)