Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30o11
(311 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 101 9e-23
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 94 2e-20
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958... 28 1.3
10_07_0170 - 13777590-13777973,13778073-13778339 27 3.1
10_01_0049 - 668482-669283,669596-670131,670235-670452,670554-67... 27 3.1
02_02_0391 - 9646256-9646528 27 4.1
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 26 5.4
04_03_0096 + 11158108-11159083,11159116-11159744 26 5.4
11_01_0551 + 4361640-4363386,4363443-4363687 26 7.2
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774... 26 7.2
08_02_0066 - 11852258-11852461,11852542-11852957,11853778-11854333 25 9.5
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 25 9.5
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 101 bits (243), Expect = 9e-23
Identities = 51/104 (49%), Positives = 67/104 (64%), Gaps = 8/104 (7%)
Frame = +3
Query: 3 YESHYTLPLGRKKGAKLT--------EAXEAIIXKKRSQKTARKYLARQRLAKVEGALEE 158
Y +HY + +GRKK A E A K+S RK RQ+ ++ +EE
Sbjct: 114 YLTHYGVDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEE 173
Query: 159 QFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 290
QF +GRLLAC++SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 174 QFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 93.9 bits (223), Expect = 2e-20
Identities = 41/69 (59%), Positives = 54/69 (78%)
Frame = +3
Query: 84 KRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYL 263
K+S RK RQ+ ++ +EEQF +GRLLAC++SRPGQCGRADGYILEGKELEFY+
Sbjct: 166 KKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYM 225
Query: 264 RKIKSKRAK 290
+K++ K+ K
Sbjct: 226 KKLQRKKGK 234
>03_04_0037 +
16694760-16695227,16695563-16695642,16695735-16695828,
16695973-16696071,16696650-16696742,16696822-16696941,
16697422-16697525,16697734-16697806,16698023-16698085
Length = 397
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 162 FHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 290
F+ +LA AS P +C R + + G + LRK S R K
Sbjct: 104 FYLRYILAAAASGPCRCRRKESLVGMGNYISRVLRKSSSDRGK 146
>10_07_0170 - 13777590-13777973,13778073-13778339
Length = 216
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 90 SQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPG 206
+Q ++ A AK+EGA + + GR+ +A PG
Sbjct: 94 AQYILEQFRATTGCAKIEGAAKSMYAAGRVRMAMAPEPG 132
>10_01_0049 -
668482-669283,669596-670131,670235-670452,670554-670653,
670706-670855
Length = 601
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 138 VEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIKSK 281
V+G + HTG+ AC + G+ A Y G L YL K++ +
Sbjct: 63 VKGNPASKTHTGKWKACYSILGGEFCGALAYYAVGTNLVSYLTKVQGQ 110
>02_02_0391 - 9646256-9646528
Length = 90
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 228 NHRRDHTDLGDSPRKPANALCG 163
N RR H D+ D PR+ CG
Sbjct: 29 NTRRQHIDIRDKPRQTQYGACG 50
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 39 KGAKLTEAXEAIIXKKRSQKTARKYLARQRLAKVEGALEEQFHT 170
KG+KL + + + R++ A R LA GAL + H+
Sbjct: 4 KGSKLEDQEAVALCRGRAELLAAAVRHRYALADAHGALADSLHS 47
>04_03_0096 + 11158108-11159083,11159116-11159744
Length = 534
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 32 EEEGSETD*G*XSYYRQEEKSKDSKKILGK--ATSC*G*GCSRRAIPHRAF 178
EEEG D Y++ EEK S K+L + A C+ R +P R+F
Sbjct: 64 EEEGEREDDWITMYFQAEEKKSMSWKLLDRMNAALLCRRRCAGRHVPLRSF 114
>11_01_0551 + 4361640-4363386,4363443-4363687
Length = 663
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 36 KKGAKLTEAXEAIIXKKRSQKTARKYLARQRLAKVEGALEEQ 161
+ G+ T+A E+I KK+ + +K + + A V A EE+
Sbjct: 289 QNGSFTTQAAESIKEKKKRAEKKKKKKKKVKAASVAAAAEEE 330
>02_05_0642 +
30576158-30576289,30576436-30576503,30577167-30577487,
30578318-30579146
Length = 449
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 146 CSRRAIPHRAFAGLRGESPR 205
CS R P R F GLR +PR
Sbjct: 23 CSSRLPPLRCFVGLRWSAPR 42
>08_02_0066 - 11852258-11852461,11852542-11852957,11853778-11854333
Length = 391
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 175 RPVWNCSSRAPSTLARRCLA 116
R +W APSTL+ R LA
Sbjct: 330 RKIWRLQKNAPSTLSSRLLA 349
>07_03_1424 - 26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 24 PLGRKKGAKLT-EAXEAIIXKKRSQKTARKYLARQRLAKVEGAL 152
P GR +G+ +I+ + S+K +ARQR+ ++EG +
Sbjct: 1649 PSGRTRGSGSPFRCISSIVQQMNSEKDQEISVARQRIEELEGLI 1692
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,346,695
Number of Sequences: 37544
Number of extensions: 99106
Number of successful extensions: 291
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -