Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30o11
(311 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 148 4e-36
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 148 4e-36
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 148 4e-36
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 148 4e-36
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 148 4e-36
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 115 3e-26
BC037399-1|AAH37399.1| 446|Homo sapiens KIAA0415 protein protein. 29 2.2
BC008841-1|AAH08841.2| 391|Homo sapiens KIAA0415 protein protein. 29 2.2
AB007875-1|BAA24845.1| 634|Homo sapiens KIAA0415 protein. 29 2.2
CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein. 29 2.9
BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying pro... 29 2.9
AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein. 29 2.9
AK223187-1|BAD96907.1| 201|Homo sapiens hypothetical protein FL... 29 2.9
AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens ... 29 2.9
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 148 bits (358), Expect = 4e-36
Identities = 67/96 (69%), Positives = 79/96 (82%)
Frame = +3
Query: 3 YESHYTLPLGRKKGAKLTEAXEAIIXKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLL 182
YESHY LPLGRKKGAKLT E I+ KKRS+K +KY R++ AK+ LEEQF G+LL
Sbjct: 113 YESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLL 172
Query: 183 ACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 290
AC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 173 ACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 148 bits (358), Expect = 4e-36
Identities = 67/96 (69%), Positives = 79/96 (82%)
Frame = +3
Query: 3 YESHYTLPLGRKKGAKLTEAXEAIIXKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLL 182
YESHY LPLGRKKGAKLT E I+ KKRS+K +KY R++ AK+ LEEQF G+LL
Sbjct: 113 YESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLL 172
Query: 183 ACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 290
AC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 173 ACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 148 bits (358), Expect = 4e-36
Identities = 67/96 (69%), Positives = 79/96 (82%)
Frame = +3
Query: 3 YESHYTLPLGRKKGAKLTEAXEAIIXKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLL 182
YESHY LPLGRKKGAKLT E I+ KKRS+K +KY R++ AK+ LEEQF G+LL
Sbjct: 93 YESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLL 152
Query: 183 ACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 290
AC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 153 ACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 188
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 148 bits (358), Expect = 4e-36
Identities = 67/96 (69%), Positives = 79/96 (82%)
Frame = +3
Query: 3 YESHYTLPLGRKKGAKLTEAXEAIIXKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLL 182
YESHY LPLGRKKGAKLT E I+ KKRS+K +KY R++ AK+ LEEQF G+LL
Sbjct: 113 YESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLL 172
Query: 183 ACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 290
AC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 173 ACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 148 bits (358), Expect = 4e-36
Identities = 67/96 (69%), Positives = 79/96 (82%)
Frame = +3
Query: 3 YESHYTLPLGRKKGAKLTEAXEAIIXKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLL 182
YESHY LPLGRKKGAKLT E I+ KKRS+K +KY R++ AK+ LEEQF G+LL
Sbjct: 113 YESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLL 172
Query: 183 ACVASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 290
AC+ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 173 ACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 115 bits (276), Expect = 3e-26
Identities = 52/80 (65%), Positives = 64/80 (80%)
Frame = +3
Query: 51 LTEAXEAIIXKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGY 230
LT E I+ KKRS+K +KY R++ AK+ LEEQF G+LLAC+ASRPGQCGRADGY
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGY 60
Query: 231 ILEGKELEFYLRKIKSKRAK 290
+LEGKELEFYLRKIK+++ K
Sbjct: 61 VLEGKELEFYLRKIKARKGK 80
>BC037399-1|AAH37399.1| 446|Homo sapiens KIAA0415 protein protein.
Length = 446
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -2
Query: 199 RLATQASKRPVWNCSSRAPSTL 134
R A AS+RP+W+ S RAPS L
Sbjct: 329 RSAPAASERPLWDTSLRAPSCL 350
>BC008841-1|AAH08841.2| 391|Homo sapiens KIAA0415 protein protein.
Length = 391
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -2
Query: 199 RLATQASKRPVWNCSSRAPSTL 134
R A AS+RP+W+ S RAPS L
Sbjct: 69 RSAPAASERPLWDTSLRAPSCL 90
>AB007875-1|BAA24845.1| 634|Homo sapiens KIAA0415 protein.
Length = 634
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -2
Query: 199 RLATQASKRPVWNCSSRAPSTL 134
R A AS+RP+W+ S RAPS L
Sbjct: 506 RSAPAASERPLWDTSLRAPSCL 527
>CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein.
Length = 201
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 30 GRKKGAKLTEAXEAIIXKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 176
GRKK +++TE +AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying
protein 6 protein.
Length = 201
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 30 GRKKGAKLTEAXEAIIXKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 176
GRKK +++TE +AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein.
Length = 201
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 30 GRKKGAKLTEAXEAIIXKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 176
GRKK +++TE +AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AK223187-1|BAD96907.1| 201|Homo sapiens hypothetical protein
FLJ11749 variant protein.
Length = 201
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 30 GRKKGAKLTEAXEAIIXKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 176
GRKK +++TE +AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQGKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
>AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to
NUCLEAR PROTEIN SNF7. ).
Length = 201
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 30 GRKKGAKLTEAXEAIIXKKRSQKTARKYLAR--QRLAKVEGALEEQFHTGR 176
GRKK +++TE +AI+ K+ + R+Y R Q+L + + GR
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLERERALARQLLRDGR 56
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,908,479
Number of Sequences: 237096
Number of extensions: 534884
Number of successful extensions: 1173
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1459139350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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