Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30o08
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    29   0.67 
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    27   3.6  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    27   3.6  
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    25   8.3  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    25   8.3  

>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 131 VQTTVKKIHAYSHHLFALRTL 193
           ++  VKKIH ++H +F LRTL
Sbjct: 63  LKVAVKKIHPFNHPVFCLRTL 83


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = +1

Query: 34  TRNVFKNFKMKTLIFIMLVACVASAAYGALVCGTDYCEKNPCIQPPLVCPKNTEHRARHA 213
           +RN F+ FK      ++    +AS   G  +   D+  +   + PPL  PK+  HR   A
Sbjct: 298 SRN-FEKFKKSNKKTVLFTTDIASR--GLDIPNVDFVLQ---LDPPLD-PKSFSHRCGRA 350

Query: 214 GKCACCPACVTLLGEG 261
           G+       + LL +G
Sbjct: 351 GRAGRAGVAIVLLNDG 366


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = +2

Query: 110 RTVLWYVVQTTV-----KKIHAYSHHLFAL 184
           R + WY + TT+     + I+AY HHLF +
Sbjct: 109 RFINWYFLMTTLYYAYGESIYAYFHHLFIM 138


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +2

Query: 599 LLYSH-----KSLIIVQIWRLGLDKFIKNDLLVIKKKIQSHIPQI 718
           L+Y H     + ++ +  W LG ++ I+ +  + K+K  +HIPQ+
Sbjct: 59  LIYKHTCRCFQQVVRIVYWFLG-NQVIRENFSIKKRKPHNHIPQL 102


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 650 TLVSKFAQLLETYENIIIIFDE 585
           T  SK+ QL +TY NI + FDE
Sbjct: 128 TAFSKWNQLGKTYGNINVYFDE 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,834
Number of Sequences: 5004
Number of extensions: 61745
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)