Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30o08
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0002 - 15280292-15281550,15282714-15282840                       34   0.099
01_01_0522 - 3834551-3835451,3835992-3836572                           28   8.6  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    28   8.6  

>06_03_0002 - 15280292-15281550,15282714-15282840
          Length = 461

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +1

Query: 229 CPACVTLLGEGATCKIYSKELGETPSAVCKEPLKCIKRVCTKLV*SFSLAGKYKLAILLS 408
           C  C++L+   A C  Y   L   P        +C    C + V  + +AG+++ A++  
Sbjct: 164 CTECLSLVRSAAVCS-YCLSLDNLPPEDSSVTCRC----CNRCVHPYCIAGEHRAALIQP 218

Query: 409 RPVRNIICV 435
             V N ICV
Sbjct: 219 IDVENFICV 227


>01_01_0522 - 3834551-3835451,3835992-3836572
          Length = 493

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +1

Query: 154 PCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIYSKELGETPSAVCKEPL 327
           P IQP L C     H+  HA +CA   A     G+G      ++     P  V  EP+
Sbjct: 271 PTIQPVLSCIFRGVHKCHHAKECAGGGAAAGNNGDGDGNDEEAETETAEPEVVVVEPV 328


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 172 LVCPKNTEHRARHAGKCACCP 234
           L C K++  R  HAGKC  CP
Sbjct: 313 LQCGKHSCERGCHAGKCGGCP 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,019,978
Number of Sequences: 37544
Number of extensions: 361560
Number of successful extensions: 887
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)