Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30n22
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    26   0.31 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.95 

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -3

Query: 640 NAVSSPRASSAGSYILGSVGSNNELKVWIPRSTG-LPFNCTKFLMKGSDLK 491
           N ++SP+ ++   +++G V SNN+ K +  ++   L FN   ++ KG   K
Sbjct: 21  NIIASPQLNNPTLFMIGGVFSNNKSKKYFEQTLNELNFN-LNYVNKGVTYK 70


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 546 ERGIQTFSSLLLPTDPNMYEPALEARGDDTAFILY 650
           +R ++ F   LLP DP +Y+     + D  A ++Y
Sbjct: 32  QRSLEFFD--LLPEDPKLYDKMRPPKKDGQATVVY 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,655
Number of Sequences: 438
Number of extensions: 4538
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)