Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30n21
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    27   0.97 
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    27   1.3  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    27   1.3  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   2.2  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   2.2  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    25   3.9  
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    25   5.2  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   6.8  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   6.8  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    24   9.0  

>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 339 NKNTYLSPPNKMLRHRNYPKNVRGPLTPASKLVLHPS 229
           NK   ++PP   L+H  +   V GP T A      PS
Sbjct: 34  NKTVTITPPKHGLKHSRHKNRVNGPRTFAFDECFAPS 70


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 193 KHNYRLPLRVNLLFITINTIPLLVVRHVTSV 101
           ++N RLP   N ++    TI +L V HVT V
Sbjct: 107 RNNERLPYLCNAIWSFYTTIVILAVLHVTHV 137


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 287 IPKMYEVL*HPQVNLYYILPATRQYFCKPHHEAQLSSP 174
           + K++ VL HP +N    L    +YF K  H+     P
Sbjct: 210 VTKVFNVLDHPDINDSTCLTKEARYFVKEQHKKLSRKP 247


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -1

Query: 241  ITSFPQQDNIFVSHTTKHNYRLPLRVNLLFITINTIPLLVVRH 113
            I +FPQ  NI  +H TK N    L V   F   +T  L  V+H
Sbjct: 1029 INTFPQLFNILTTHATKDN----LTVKDCFPKDDTQQLAAVKH 1067


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 134 SITRCSSRNISCNNIFVQVFTCCLH*GRNCTVAVWWKRQ 18
           S ++CS R  +C  I+    TCC+  G +C  +  W  Q
Sbjct: 22  SASQCSPRYGTCGGIYYDGPTCCVV-GSSCIYSNPWYSQ 59


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 195 RSTTIVSLYE*ICYLLLSILFHY 127
           R T+++SL   +CYL+  +L+H+
Sbjct: 163 RHTSVISLIA-LCYLVFIVLYHF 184


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 160 LLFITINTIPLLVVRHVTSVVIIYLSKY 77
           LL + INT PL +        +I+++KY
Sbjct: 48  LLHVRINTSPLFIKTTTRPTALIHITKY 75


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 192 STTIVSLYE*ICYLLLSILFHYSLF 118
           ST +  LYE   YL++   FHYS+F
Sbjct: 590 STPMSKLYE--DYLVMLFAFHYSMF 612


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -2

Query: 198 PRSTTIVSLYE*ICYLLLSILFHYSLFVT*HQL**YIC--PSIYVLSALR 55
           P   +I   Y+ ICY   +IL  Y LF+  +     IC  P  + +  +R
Sbjct: 39  PNIYSIPFFYDRICYDYKNILLKYELFIIYYYYYLLICLSPHFFPIKRIR 88


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 166 LVKGDDSCASWCGLQKYCL 222
           +V   D C  WC   ++CL
Sbjct: 510 VVNAPDLCGEWCDWYRHCL 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,030
Number of Sequences: 5004
Number of extensions: 40835
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)