Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30n06
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...   261   8e-71
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb...    27   2.8  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.7  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    26   4.9  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    26   6.4  

>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score =  261 bits (639), Expect = 8e-71
 Identities = 123/187 (65%), Positives = 147/187 (78%)
 Frame = +2

Query: 179 TSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRVI 358
           +S +   K +TVRDALN A++EEM+RD++VF++GEEVAQY+GAYK++RGL  K+G KRVI
Sbjct: 29  SSSSNGVKEMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVI 88

Query: 359 DTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGTVPVPIV 538
           DTPITE              L+PICEFMTFNFSMQAIDHI+NSAA+T YMS G    PIV
Sbjct: 89  DTPITEMGFTGLATGAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGGIQACPIV 148

Query: 539 FRGPNGAASGVAAQHSQCFGAWYSHCPGLKVLMPYSAEDAKGLLKAAIRDPDPVVMLEDE 718
           FRGPNG A+ VAAQHSQ F  WY   PGLKV+ PYSAEDA+GLLKAAIRDP+PVV+LE+E
Sbjct: 149 FRGPNGPAAAVAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENE 208

Query: 719 IMYGIPF 739
           I+YG  F
Sbjct: 209 ILYGKTF 215


>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +2

Query: 134 AVLGMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDG 304
           A+   +T+++  + +  +A   K +  RDALN  + E  ER   +    E +  Y G
Sbjct: 319 AIQQKITQMTNETESFFQAKEEKMIETRDALNSELSEYHERIRALETQIESLKSYKG 375


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 129 DDFNAILNIMSLLNNFCNT*TSKVVYWRGKILVLSKMILNSR 4
           D F  +  I  + N F N+ +  +VY+    L LS++ L  R
Sbjct: 704 DSFTCVSGIYDIPNKFQNSESRIIVYYSNNTLYLSELWLPQR 745


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
 Frame = +2

Query: 161 SRRSFATSKALASKPVTVRDALN----QAIDEEMERDEKVFV-----LGEEVAQYDGAYK 313
           +R+SF    AL +   T+R+ LN    Q  D E ++    FV     L E   Q DG YK
Sbjct: 143 TRKSFVELNALQTSIDTIRNELNELRDQLNDSESKKLSDKFVEIRSELDEVRKQQDGYYK 202

Query: 314 VTRGLWKKYGDKR 352
             R L  +  D++
Sbjct: 203 DQRKLIAERDDEK 215


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 426 GLSPAKAAPTAIPANPASVMGVSI 355
           G SPA  APT+    PA++   SI
Sbjct: 213 GFSPATPAPTSAANTPATIAATSI 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,034,067
Number of Sequences: 5004
Number of extensions: 62052
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)