Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30n06
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593... 269 1e-72
08_02_1399 + 26771106-26771171,26772004-26772111,26772218-267722... 267 7e-72
03_05_0477 + 24707460-24707553,24707644-24707711,24707857-247079... 142 3e-34
12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812 141 6e-34
07_01_0503 - 3751028-3751063,3751145-3751231,3751333-3751410,375... 56 3e-08
12_02_0344 - 17765602-17765634,17765703-17765765,17766073-17766150 29 3.9
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 29 5.1
09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645 28 6.7
04_04_0764 - 27889257-27889394,27889472-27890128,27904516-279045... 28 6.7
11_06_0618 + 25565780-25566064,25566855-25567046,25567144-255674... 28 8.9
04_04_0650 + 26950912-26951397,26951552-26951728 28 8.9
02_04_0551 + 23801464-23801802 28 8.9
>09_04_0686 +
19457832-19457870,19458021-19458107,19459311-19459391,
19459463-19459489,19459589-19459651,19459768-19459854,
19460290-19460415,19460827-19460960,19461037-19461109,
19461307-19461372,19461778-19461816,19461927-19462051,
19462131-19462245,19463109-19463141,19463525-19463593
Length = 387
Score = 269 bits (660), Expect = 1e-72
Identities = 131/212 (61%), Positives = 159/212 (75%), Gaps = 5/212 (2%)
Frame = +2
Query: 119 LKSSPAVLGMLTRLSRRSFATSKAL-----ASKPVTVRDALNQAIDEEMERDEKVFVLGE 283
L S P + +L RL + A + A A+K +TVR+ALN A+DEEM D VF++GE
Sbjct: 9 LGSGPMLGQVLRRLRPATAAAADAARAYSAAAKEMTVREALNSALDEEMSADPSVFLMGE 68
Query: 284 EVAQYDGAYKVTRGLWKKYGDKRVIDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQ 463
EV +Y GAYK+++GL KYG +RV+DTPITE L+P+ EFMTFNFSMQ
Sbjct: 69 EVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAVGAAYQGLRPVVEFMTFNFSMQ 128
Query: 464 AIDHIINSAAKTFYMSAGTVPVPIVFRGPNGAASGVAAQHSQCFGAWYSHCPGLKVLMPY 643
AIDHIINSAAK+ YMSAG + VPIVFRGPNGAA+GV AQHSQC+ AWY+H PGLKVL+PY
Sbjct: 129 AIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLVPY 188
Query: 644 SAEDAKGLLKAAIRDPDPVVMLEDEIMYGIPF 739
SAEDA+GLLKAAIRDPDPVV LE+E++YG F
Sbjct: 189 SAEDARGLLKAAIRDPDPVVFLENELLYGESF 220
>08_02_1399 +
26771106-26771171,26772004-26772111,26772218-26772280,
26772382-26772468,26772931-26773056,26773418-26773551,
26773627-26773699,26773819-26773884,26774358-26774391,
26774904-26774953,26775067-26775191,26775278-26775392,
26775617-26775685
Length = 371
Score = 267 bits (654), Expect = 7e-72
Identities = 124/188 (65%), Positives = 148/188 (78%)
Frame = +2
Query: 176 ATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRV 355
A + + A+K +TVR+ALN A+DEEM D VF++GEEV +Y GAYK+++GL KYG RV
Sbjct: 13 ARTYSAAAKEMTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRV 72
Query: 356 IDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGTVPVPI 535
+DTPITE L+P+ EFMTFNFSMQAIDHIINSAAK+ YMSAG + VPI
Sbjct: 73 LDTPITEAGFTGIGVGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPI 132
Query: 536 VFRGPNGAASGVAAQHSQCFGAWYSHCPGLKVLMPYSAEDAKGLLKAAIRDPDPVVMLED 715
VFRGPNGAA+GV AQHSQC+ AWY+H PGLKVL PYSAEDA+GLLKAAIRDPDPVV LE+
Sbjct: 133 VFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLTPYSAEDARGLLKAAIRDPDPVVFLEN 192
Query: 716 EIMYGIPF 739
E++YG F
Sbjct: 193 ELLYGESF 200
>03_05_0477 +
24707460-24707553,24707644-24707711,24707857-24707903,
24709188-24710160
Length = 393
Score = 142 bits (344), Expect = 3e-34
Identities = 72/197 (36%), Positives = 109/197 (55%)
Frame = +2
Query: 143 GMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTR 322
G +++ + A S V + +AL +A+ EEM+ D V V GE+V Y G+YKVT+
Sbjct: 52 GRMSKAESPASAASSKSDGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTK 111
Query: 323 GLWKKYGDKRVIDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTF 502
GL + +GD RV+DTPI E L+P+ E M F + A + I N+
Sbjct: 112 GLAEMFGDLRVLDTPIAENSFTGMGVGAAMKGLRPVVEGMNMGFLLLAYNQISNNCGMLH 171
Query: 503 YMSAGTVPVPIVFRGPNGAASGVAAQHSQCFGAWYSHCPGLKVLMPYSAEDAKGLLKAAI 682
Y S G +PIV RGP G + A+HSQ +++ PGL+++ + +AKGL+KAAI
Sbjct: 172 YTSGGQFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAI 231
Query: 683 RDPDPVVMLEDEIMYGI 733
R +PVV+ E ++Y +
Sbjct: 232 RSENPVVLFEHVLLYNL 248
>12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812
Length = 376
Score = 141 bits (341), Expect = 6e-34
Identities = 75/195 (38%), Positives = 109/195 (55%), Gaps = 4/195 (2%)
Frame = +2
Query: 161 SRRSFATSKALASKP----VTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGL 328
+RRS + SK V + +AL +A+ EEM+ D V V GE+V Y G+YKVT+GL
Sbjct: 37 ARRSASADATAESKSGGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGL 96
Query: 329 WKKYGDKRVIDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYM 508
+ +GD RV+DTPI E L+PI E M F + A + I N+ Y
Sbjct: 97 AEMFGDLRVLDTPIAENSFAGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYT 156
Query: 509 SAGTVPVPIVFRGPNGAASGVAAQHSQCFGAWYSHCPGLKVLMPYSAEDAKGLLKAAIRD 688
S G +PIV RGP G + A+HSQ +++ PGL+++ + +AKGL+KAAIR
Sbjct: 157 SGGQFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAIRS 216
Query: 689 PDPVVMLEDEIMYGI 733
+PVV+ E ++Y +
Sbjct: 217 ENPVVLFEHVLLYNL 231
>07_01_0503 -
3751028-3751063,3751145-3751231,3751333-3751410,
3751488-3751583,3752124-3752210,3752289-3752357,
3752511-3752600,3752601-3752720,3752907-3753004,
3753084-3753193,3753463-3753533,3753679-3753714,
3753862-3753973,3754495-3754700
Length = 431
Score = 56.0 bits (129), Expect = 3e-08
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 22/167 (13%)
Frame = +2
Query: 194 ASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRVIDTPIT 373
A K V + A+NQA+ ++ D + +V GE+V + G ++ T GL ++G RV +TP+
Sbjct: 46 AGKEVNLFTAINQALHIALDTDPRSYVFGEDVG-FGGVFRCTTGLADRFGRNRVFNTPLC 104
Query: 374 EXXXXXXXXXXXXXXLKPICEFMTFNFSMQAID---------------------HIINSA 490
E + I E ++ A D I+N A
Sbjct: 105 EQGIAGFAVGLAAMGNRAIAEIQFADYIFPAFDQACLRLDQCFVPTYLYIQLLVQIVNEA 164
Query: 491 AKTFYMSAGTVPV-PIVFRGPNGAASGVAAQHSQCFGAWYSHCPGLK 628
AK Y S + R P GA HSQ A++ H PGLK
Sbjct: 165 AKFRYRSGNEFNCGGLTIRSPYGAVGHGGHYHSQSPEAFFCHVPGLK 211
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = +2
Query: 524 PVPIVFRGPNGAASGVAAQHSQCFGAWYSHCPGLK----VLMPYSAEDAKGLLKAAIRDP 691
P+ + GP + G+ + + W C +K V++P S +AKGLL A+IRDP
Sbjct: 214 PLLDLISGPT-SLFGLGSSNGLHRNLWLFSCKLMKDKFQVIIPRSPREAKGLLLASIRDP 272
Query: 692 DPVVMLEDEIMY 727
+PVV E + +Y
Sbjct: 273 NPVVFFEPKWLY 284
>12_02_0344 - 17765602-17765634,17765703-17765765,17766073-17766150
Length = 57
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 220 CFKSSDRRGDGERRESLRFGRGSRSIRWCLQ 312
C K +RG G+R ESL + R + W +Q
Sbjct: 10 CAKGGHKRGLGDREESLAYTRRFLLVSWLMQ 40
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 518 TVPVPIVFRGPNGAASGVAAQHSQCFGAWYSHCP 619
+V P++F G + A V FGAWYS P
Sbjct: 23 SVLTPLLFAGGDPRAQEVTTSSISRFGAWYSGSP 56
>09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645
Length = 375
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 113 MALKSSPAVLGMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEK 265
M + PA+ L ++RRS K+LA K + R+ N + D+K
Sbjct: 177 MPHRKDPALPNTLNDINRRSQEIGKSLARKKLATREQKNPTSPDITNNDQK 227
>04_04_0764 -
27889257-27889394,27889472-27890128,27904516-27904572,
27904935-27905032,27905047-27905113
Length = 338
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 566 GVAAQHSQCFGAWYSHCPGLKVL-MPYSAE-DAKGLLKAAI 682
GVA H+ CF +W P KV+ +P +A +++ LLK A+
Sbjct: 197 GVAYSHASCFVSWKRANPAEKVVAVPMTAGIESQKLLKKAV 237
>11_06_0618 +
25565780-25566064,25566855-25567046,25567144-25567416,
25567636-25567738,25568273-25568391,25568615-25568782,
25568908-25569386,25569742-25569850,25569905-25570070,
25571405-25571433
Length = 640
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 214 KRCFKSSDRRGDGERRESLRFGRGSRSIRW 303
KR F+ + RG ++ L FGRGSR W
Sbjct: 551 KRFFREHNMRGS-HNKDVLTFGRGSRENTW 579
>04_04_0650 + 26950912-26951397,26951552-26951728
Length = 220
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 128 SPAVLGMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEME 253
SPA L + RL R ++ +++ PV +D Q +EE E
Sbjct: 10 SPAKLSLERRLPRATWTARRSVRFPPVRAQDQQQQVKEEEEE 51
>02_04_0551 + 23801464-23801802
Length = 112
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 545 GPNGAASGVAAQHSQCFGAW 604
G AA+ VA QH+ C GAW
Sbjct: 11 GGGAAAAAVARQHAVCDGAW 30
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,357,516
Number of Sequences: 37544
Number of extensions: 440884
Number of successful extensions: 1292
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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