Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30n05
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    27   2.8  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    27   3.8  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   3.8  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    26   5.0  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   8.7  

>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 436 DNLSISGPTIAGPSKAMHGETAEIKRASPLSNPTES 329
           +N S    T++ P   +HG+  E+KRA+P ++  +S
Sbjct: 296 ENESAVEATMSQPYITIHGKPVEVKRATPKASLRDS 331


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 529 LSSILYFSLYHTRKDMRLVGLKFCSCVMRTARTSCKKFA 645
           L S +  S YH R +  ++GLK C  +++  R +    A
Sbjct: 53  LGSRVRHSYYHKRDNEVIIGLKICKTLVQKCRDNINVMA 91


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 346 SNPTESMCSGRKGKMQPTPERKQKRTHFKVMRFLF 242
           S+PT+   + +     P+P ++ K +HF V  F F
Sbjct: 448 SSPTKESTTRKSEVEPPSPSKEIKSSHFSVPEFKF 482


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 645 KEDMRCNRWSGEKSGVLAVGSCEYXCAD 728
           K+ +    W  +++GVLAVG+    C D
Sbjct: 420 KQSLTSEDWKVQEAGVLAVGAIAEGCMD 447


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 511  HALYSVLSSILYFSLYHTRKDMRLVGL 591
            H  YS+L S+LY  + H  +  ++ G+
Sbjct: 1164 HVFYSILKSLLYSMVQHDSEMKKIKGI 1190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,927,554
Number of Sequences: 5004
Number of extensions: 56162
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)