Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30n04
(526 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 32 0.29
U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical pr... 32 0.29
AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical ... 31 0.50
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ... 31 0.50
Z81473-7|CAB60992.2| 661|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z81063-8|CAB61013.2| 661|Caenorhabditis elegans Hypothetical pr... 29 1.5
AF492701-1|AAM49753.1| 647|Caenorhabditis elegans SPE-9 protein. 29 1.5
AF492700-1|AAM49752.1| 647|Caenorhabditis elegans SPE-9 protein. 29 1.5
AF492699-1|AAM49751.1| 647|Caenorhabditis elegans SPE-9 protein. 29 1.5
AF492698-1|AAM49750.1| 647|Caenorhabditis elegans SPE-9 protein. 29 1.5
AF492697-1|AAM49749.1| 647|Caenorhabditis elegans SPE-9 protein. 29 1.5
AF492696-1|AAM49748.1| 647|Caenorhabditis elegans SPE-9 protein. 29 1.5
AF492695-1|AAM49747.1| 647|Caenorhabditis elegans SPE-9 protein. 29 1.5
AF492694-1|AAM49746.1| 647|Caenorhabditis elegans SPE-9 protein. 29 1.5
AF492693-1|AAM49745.1| 647|Caenorhabditis elegans SPE-9 protein. 29 1.5
AF492692-1|AAM49744.1| 647|Caenorhabditis elegans SPE-9 protein. 29 1.5
AF492691-1|AAM49743.1| 647|Caenorhabditis elegans SPE-9 protein. 29 1.5
AF492690-1|AAM49742.1| 647|Caenorhabditis elegans SPE-9 protein. 29 1.5
AF492688-1|AAM49741.1| 647|Caenorhabditis elegans SPE-9 protein. 29 1.5
AF492687-1|AAM49740.1| 647|Caenorhabditis elegans SPE-9 protein. 29 1.5
AF492686-1|AAM49739.1| 647|Caenorhabditis elegans SPE-9 protein. 29 1.5
AF049327-1|AAC38980.1| 661|Caenorhabditis elegans sperm transme... 29 1.5
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 29 2.0
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 29 2.0
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 29 2.0
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 29 2.0
Z70037-3|CAC42352.1| 902|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z70037-2|CAA93879.2| 906|Caenorhabditis elegans Hypothetical pr... 29 2.7
D84668-1|BAA86913.1| 902|Caenorhabditis elegans CLH-1 protein. 29 2.7
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 28 4.7
U67956-5|AAB07694.1| 724|Caenorhabditis elegans Mechanosensory ... 28 4.7
U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase prote... 28 4.7
L25312-1|AAA17404.1| 724|Caenorhabditis elegans mec-10 degeneri... 28 4.7
AL117193-1|CAB54981.1| 767|Caenorhabditis elegans Hypothetical ... 28 4.7
Z49068-2|CAA88855.1| 389|Caenorhabditis elegans Hypothetical pr... 27 6.2
AF173170-1|AAF13163.1| 868|Caenorhabditis elegans CLC chloride ... 27 6.2
U39999-7|AAY44012.1| 232|Caenorhabditis elegans Hypothetical pr... 27 8.2
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
H02I12.1 protein.
Length = 1319
Score = 31.9 bits (69), Expect = 0.29
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +2
Query: 161 CTSRGYFASES--CTSYIACVEAINGLATARLIECPMNTVFNPEDGLCVHVNSY-KCNIK 331
C+ G F +++ C + CV + T CP TVFNP +C ++ C+ +
Sbjct: 1245 CSEHGSFIADANNCEVFYRCVWGRKVVMT-----CPSGTVFNPLLSVCDWPSAVPSCSGQ 1299
Query: 332 SSDQTDLYTEEVFKDSRN 385
+SD Y + D ++
Sbjct: 1300 ASDSNSSYGSSTYNDDKS 1317
>U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical
protein R02F2.4 protein.
Length = 431
Score = 31.9 bits (69), Expect = 0.29
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Frame = +2
Query: 74 LTCPIGFVYSHKEQQCT---NVTSYSCHESYNCTSRGYFASESCTS-YIACVEAINGLAT 241
L+C +Y ++C+ + S C S G + C++ + +C E G+A
Sbjct: 147 LSCSTPLIYDPTNKKCSWKGMIDECSQVSGEYCESDGNISKSECSNVFFSCSE---GIAH 203
Query: 242 ARLIECPMNTVFNPEDGLC 298
R CP N VFNP C
Sbjct: 204 RR--NCPANLVFNPAISSC 220
Score = 30.3 bits (65), Expect = 0.88
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 13/94 (13%)
Frame = +2
Query: 80 CPIGFVYSHKEQQCTNVTSY-SCHESYNCTSRGYFASES---CTSY------IACVEAIN 229
CP G ++S K Q C + C + Y ASE+ CT+ + C +
Sbjct: 268 CPDGLMFSEKNQMCDYEWNVDECDLESSGFMENYKASEALTPCTNMDNGLYALDCTPRVL 327
Query: 230 GLATAR--LIECPMNTVFNPEDGLCVH-VNSYKC 322
R + ECP + VFN +C + S KC
Sbjct: 328 SCQNGRENIFECPPSLVFNENSLICDYPETSLKC 361
>AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical
protein Y46G5A.1b protein.
Length = 1021
Score = 31.1 bits (67), Expect = 0.50
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 315 TSVTLKVVIKRICTQRKCLKILEILLSTGPSKLMLD 422
T + + +IK + ++K LK++E+ S GPSK M D
Sbjct: 552 TDLQKRRIIKELSREKKWLKMIEVWKSGGPSKKMED 587
>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
protein Y46G5A.1a protein.
Length = 1085
Score = 31.1 bits (67), Expect = 0.50
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 315 TSVTLKVVIKRICTQRKCLKILEILLSTGPSKLMLD 422
T + + +IK + ++K LK++E+ S GPSK M D
Sbjct: 552 TDLQKRRIIKELSREKKWLKMIEVWKSGGPSKKMED 587
>Z81473-7|CAB60992.2| 661|Caenorhabditis elegans Hypothetical
protein C17D12.6 protein.
Length = 661
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 257 CPMNTVFNPEDGLCVHVNSYKC 322
CP++ NPE C+ +N KC
Sbjct: 449 CPLSAKLNPESQACMEINEKKC 470
>Z81063-8|CAB61013.2| 661|Caenorhabditis elegans Hypothetical
protein C17D12.6 protein.
Length = 661
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 257 CPMNTVFNPEDGLCVHVNSYKC 322
CP++ NPE C+ +N KC
Sbjct: 449 CPLSAKLNPESQACMEINEKKC 470
>AF492701-1|AAM49753.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 257 CPMNTVFNPEDGLCVHVNSYKC 322
CP++ NPE C+ +N KC
Sbjct: 435 CPLSAKLNPESQACMEINEKKC 456
>AF492700-1|AAM49752.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 257 CPMNTVFNPEDGLCVHVNSYKC 322
CP++ NPE C+ +N KC
Sbjct: 435 CPLSAKLNPESQACMEINEKKC 456
>AF492699-1|AAM49751.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 257 CPMNTVFNPEDGLCVHVNSYKC 322
CP++ NPE C+ +N KC
Sbjct: 435 CPLSAKLNPESQACMEINEKKC 456
>AF492698-1|AAM49750.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 257 CPMNTVFNPEDGLCVHVNSYKC 322
CP++ NPE C+ +N KC
Sbjct: 435 CPLSAKLNPESQACMEINEKKC 456
>AF492697-1|AAM49749.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 257 CPMNTVFNPEDGLCVHVNSYKC 322
CP++ NPE C+ +N KC
Sbjct: 435 CPLSAKLNPESQACMEINEKKC 456
>AF492696-1|AAM49748.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 257 CPMNTVFNPEDGLCVHVNSYKC 322
CP++ NPE C+ +N KC
Sbjct: 435 CPLSAKLNPESQACMEINEKKC 456
>AF492695-1|AAM49747.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 257 CPMNTVFNPEDGLCVHVNSYKC 322
CP++ NPE C+ +N KC
Sbjct: 435 CPLSAKLNPESQACMEINEKKC 456
>AF492694-1|AAM49746.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 257 CPMNTVFNPEDGLCVHVNSYKC 322
CP++ NPE C+ +N KC
Sbjct: 435 CPLSAKLNPESQACMEINEKKC 456
>AF492693-1|AAM49745.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 257 CPMNTVFNPEDGLCVHVNSYKC 322
CP++ NPE C+ +N KC
Sbjct: 435 CPLSAKLNPESQACMEINEKKC 456
>AF492692-1|AAM49744.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 257 CPMNTVFNPEDGLCVHVNSYKC 322
CP++ NPE C+ +N KC
Sbjct: 435 CPLSAKLNPESQACMEINEKKC 456
>AF492691-1|AAM49743.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 257 CPMNTVFNPEDGLCVHVNSYKC 322
CP++ NPE C+ +N KC
Sbjct: 435 CPLSAKLNPESQACMEINEKKC 456
>AF492690-1|AAM49742.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 257 CPMNTVFNPEDGLCVHVNSYKC 322
CP++ NPE C+ +N KC
Sbjct: 435 CPLSAKLNPESQACMEINEKKC 456
>AF492688-1|AAM49741.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 257 CPMNTVFNPEDGLCVHVNSYKC 322
CP++ NPE C+ +N KC
Sbjct: 435 CPLSAKLNPESQACMEINEKKC 456
>AF492687-1|AAM49740.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 257 CPMNTVFNPEDGLCVHVNSYKC 322
CP++ NPE C+ +N KC
Sbjct: 435 CPLSAKLNPESQACMEINEKKC 456
>AF492686-1|AAM49739.1| 647|Caenorhabditis elegans SPE-9 protein.
Length = 647
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 257 CPMNTVFNPEDGLCVHVNSYKC 322
CP++ NPE C+ +N KC
Sbjct: 435 CPLSAKLNPESQACMEINEKKC 456
>AF049327-1|AAC38980.1| 661|Caenorhabditis elegans sperm
transmembrane protein protein.
Length = 661
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 257 CPMNTVFNPEDGLCVHVNSYKC 322
CP++ NPE C+ +N KC
Sbjct: 449 CPLSAKLNPESQACMEINEKKC 470
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
F54F3.1 protein.
Length = 1584
Score = 29.1 bits (62), Expect = 2.0
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Frame = +2
Query: 89 GFVYSHKEQQCTNVTSYSCHESYNCTSRGYFASESCTSYIACVEAINGLATARLIECPMN 268
GF+ QC +C+++ +C + +C CV+ G T+ + P
Sbjct: 1100 GFINCRGADQCNPSNPSACYQNAHCVYDAILNAHAC----KCVDGFKGDGTSCVPYAPA- 1154
Query: 269 TVFNPEDGLC-------VH--VNSYKCNIKSSDQTDLYTE 361
T N E +C +H N+Y+C K D YT+
Sbjct: 1155 TNCNLEPRICHANAQCVMHHDTNAYECICKPGSSGDGYTK 1194
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +2
Query: 155 YNCTSR--GYFASESCT-SYIACVEAINGLATARLIECPMNTVFNPEDGLCVHVNSYKCN 325
++CT + G + E+CT S+ C + G A A +CP + VFN G C + + N
Sbjct: 431 FDCTGKPNGKYIKEACTKSFFTCHD---GRAFAN--DCPGDLVFNKATGTCDFAENCEKN 485
Query: 326 IKSSDQ 343
Q
Sbjct: 486 YMEPSQ 491
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = +2
Query: 14 DCRGYTMCLMGGANNFTQYRLTCPIGFVYSHKEQQC-TNVTSYSCHESYNCTSRGYFASE 190
DC C GG + + CP G++ + E C ++ +C + NC + G +
Sbjct: 1338 DCNQLCSCENGGVCDSSTGSCVCPPGYIGTKCEIACQSDRFGPTCEKICNCENGG--TCD 1395
Query: 191 SCTSYIACVEAINGLATARLIECP 262
T C+ G+ ++ CP
Sbjct: 1396 RLTGQCRCLPGFTGMTCNQV--CP 1417
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = +2
Query: 14 DCRGYTMCLMGGANNFTQYRLTCPIGFVYSHKEQQC-TNVTSYSCHESYNCTSRGYFASE 190
DC C GG + + CP G++ + E C ++ +C + NC + G +
Sbjct: 1338 DCNQLCSCENGGVCDSSTGSCVCPPGYIGTKCEIACQSDRFGPTCEKICNCENGG--TCD 1395
Query: 191 SCTSYIACVEAINGLATARLIECP 262
T C+ G+ ++ CP
Sbjct: 1396 RLTGQCRCLPGFTGMTCNQV--CP 1417
>Z70037-3|CAC42352.1| 902|Caenorhabditis elegans Hypothetical
protein T27D12.2b protein.
Length = 902
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 196 AAFTREVTPTRAIVRFVARVTGDICALL 113
A+FT VT + +I V TG +CALL
Sbjct: 545 ASFTGSVTHSLSIALIVCETTGQLCALL 572
>Z70037-2|CAA93879.2| 906|Caenorhabditis elegans Hypothetical
protein T27D12.2a protein.
Length = 906
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 196 AAFTREVTPTRAIVRFVARVTGDICALL 113
A+FT VT + +I V TG +CALL
Sbjct: 545 ASFTGSVTHSLSIALIVCETTGQLCALL 572
>D84668-1|BAA86913.1| 902|Caenorhabditis elegans CLH-1 protein.
Length = 902
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 196 AAFTREVTPTRAIVRFVARVTGDICALL 113
A+FT VT + +I V TG +CALL
Sbjct: 545 ASFTGSVTHSLSIALIVCETTGQLCALL 572
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
F55H12.3 protein.
Length = 2972
Score = 27.9 bits (59), Expect = 4.7
Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 4/83 (4%)
Frame = +2
Query: 80 CPIGFVYSHKEQQCT--NVTSYSCHESYNCTSRGYFASESCTSYIACV--EAINGLATAR 247
C GF + ++ C C S C S S C Y + E L
Sbjct: 1873 CYDGFTSTRCDEVCDVCKANILLCQNSGTCNSTTQ--SCDCIDYFSGTYCERNENLCETN 1930
Query: 248 LIECPMNTVFNPEDGLCVHVNSY 316
L+ C NP+ GLCV + Y
Sbjct: 1931 LVVCKNGGTCNPKTGLCVCLPDY 1953
>U67956-5|AAB07694.1| 724|Caenorhabditis elegans Mechanosensory
abnormality protein10 protein.
Length = 724
Score = 27.9 bits (59), Expect = 4.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 104 HKEQQCTNVTSYSCHESYNCTSR 172
H+++Q TN T +C E Y C+ +
Sbjct: 286 HRKEQWTNTTCQTCDEHYLCSKK 308
>U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase protein
1 protein.
Length = 617
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 14 DCRGYTMCLMGGANNFTQYRLTCPIGFVYSHKEQQCTNVTSYSC 145
+C + +CL + Y ++CP G YS + CT T+ C
Sbjct: 494 NCGLFVLCLSSKS-----YSMSCPSGLQYSASLKYCTTSTASGC 532
>L25312-1|AAA17404.1| 724|Caenorhabditis elegans mec-10 degenerin
protein.
Length = 724
Score = 27.9 bits (59), Expect = 4.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 104 HKEQQCTNVTSYSCHESYNCTSR 172
H+++Q TN T +C E Y C+ +
Sbjct: 286 HRKEQWTNTTCQTCDEHYLCSKK 308
>AL117193-1|CAB54981.1| 767|Caenorhabditis elegans Hypothetical
protein Y105C5A.1 protein.
Length = 767
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Frame = -3
Query: 233 SHLSLQRKQCMMCSFHSRSNPY------SCNCKIRGKSNW 132
+HLS Q KQ ++ PY CNCK G+S+W
Sbjct: 615 THLSDQEKQARGEKICAQLQPYVLPHFSKCNCKRMGRSSW 654
>Z49068-2|CAA88855.1| 389|Caenorhabditis elegans Hypothetical
protein K01C8.2 protein.
Length = 389
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Frame = +2
Query: 32 MCLMGGANNFTQYRLTCPIGFVYSHKE-----QQCTNVTSYSCHESYNCTSRGYFASESC 196
+C + G+ + L+CP G+ E + CT V SC Y+C + C
Sbjct: 278 VCCLTGSTPIPE-NLSCPTGWNSYKNEVDNAVRTCTAVLDTSCPIGYSCAPSNQVSQFLC 336
Query: 197 TSYIACVEAING 232
+ + ING
Sbjct: 337 CRLASSLICING 348
>AF173170-1|AAF13163.1| 868|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 868
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 196 AAFTREVTPTRAIVRFVARVTGDICALL 113
A+FT VT + +I + TG +CALL
Sbjct: 507 ASFTGSVTHSLSIALMLCETTGQLCALL 534
>U39999-7|AAY44012.1| 232|Caenorhabditis elegans Hypothetical
protein F41G3.20 protein.
Length = 232
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = +2
Query: 80 CPIGFVYSHKEQQCTNVTSYSC----HESYNCTSRGYFASESCTSYIACVEAINGLATAR 247
CP F Y C + YS + YNC A+ + T+ CV+ N +
Sbjct: 36 CPDDFTYITDSGCCPDADLYSNFIENYNHYNCRGTTTVATTTATTATTCVDLTN--PSTG 93
Query: 248 LIECP 262
+ +CP
Sbjct: 94 VSDCP 98
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,791,380
Number of Sequences: 27780
Number of extensions: 249359
Number of successful extensions: 751
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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