Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30n04
         (526 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.83 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.5  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   4.4  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   4.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 9/17 (52%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -3

Query: 179 SNPYSCNCK-IRGKSNW 132
           SNP+SC CK ++  S+W
Sbjct: 923 SNPWSCRCKFLQELSSW 939



 Score = 22.6 bits (46), Expect = 2.5
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 191 FHSRSNPYSCNCKI 150
           F+   NP++CNC +
Sbjct: 675 FYIGGNPFNCNCSM 688


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 459 KAIVKHTNPFWMYLTLILKAPLKVKF 382
           K I KH    W +L LI   PL   F
Sbjct: 158 KLIAKHYLRTWFFLDLISSIPLDYIF 183


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 459 KAIVKHTNPFWMYLTLILKAPLKVKF 382
           K I KH    W +L LI   PL   F
Sbjct: 158 KLIAKHYLRTWFFLDLISSIPLDYIF 183



 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 42  WEERIILPNTD*RAP*ASFTAIKSNNAQMSPVTLAT 149
           WEE  IL N   +   A       N ++ SPV  AT
Sbjct: 232 WEEVYILQNLQKKRTRAEGRLSSDNMSKKSPVRKAT 267


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 459 KAIVKHTNPFWMYLTLILKAPLKVKF 382
           K I KH    W +L LI   PL   F
Sbjct: 158 KLIAKHYLRTWFFLDLISSIPLDYIF 183


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 254 ECPMNTVFNPEDGLC 298
           +CP N +F+  DG C
Sbjct: 36  KCPSNEIFSRCDGRC 50


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 254 ECPMNTVFNPEDGLC 298
           +CP N +F+  DG C
Sbjct: 36  KCPSNEIFSRCDGRC 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,815
Number of Sequences: 438
Number of extensions: 3162
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)