Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30m22
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    27   3.1  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.2  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   7.3  
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...    25   7.3  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   7.3  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    25   7.3  
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    25   7.3  

>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -1

Query: 608 RSDTRLPRSTCSWLSPPDHSNSVFRSLSMENMLNGSSSPSCGKFIRRLGTKT 453
           R +T+LPR    + +PP HS +V   L+ +    G  S   G+ I     KT
Sbjct: 3   RLNTQLPRM---YSAPPGHSKAVSTELNKDLSSVGGRSAKLGQVIHHCFYKT 51


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = -1

Query: 656 IPESPAALEASLSVSLRSDTRLPRSTCSWLSPPDHSNSVFRSLSMENMLN-GSSSPSCGK 480
           I  S +A   S S +  S +    S+ S  S    S+S+  S+S     +  SSS S   
Sbjct: 133 IYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSG 192

Query: 479 FIRRLGTKTVSSMVLTILTNFSMS 408
            I     KTVS+   + ++ FS S
Sbjct: 193 SISSADAKTVSASSNSTISGFSTS 216


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +1

Query: 334 LQLLNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDE 450
           LQL + L+ I  N+  + + Q+ +++M+K V+ +N  +E
Sbjct: 875 LQLKSDLKSIRNNNERKRNLQNKISNMDKEVEAININNE 913


>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 405 E*HGEICQNG*HHG*DGLSTKPSDEF 482
           E HGE+C    H G D + TK  +++
Sbjct: 163 EEHGEVCPANWHKGSDTIDTKNPEKY 188


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 334 LQLLNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPS 468
           LQ L ++   + +DG+  S++   N      ++   MD TV++PS
Sbjct: 154 LQGLTSISSSSFDDGSYGSRRISFNSQGVSGRLRRNMDSTVIIPS 198


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = -1

Query: 644 PAALEASLSVSLRSDTRLPRS-TCSWL--SPPDHSNSVFRSLSMENMLNGSSSPSCGKFI 474
           PA +    SVS+ S  +L    T  +L  S P HS   F  ++    L  S   +  K +
Sbjct: 390 PAEVVCVGSVSIDSVLKLDNPLTSKFLGTSHPCHSEQAFGGVAHNMALASSLMGASTKLV 449

Query: 473 RRLGTKTV-SSMVLTILTNFSM 411
             +GTK+V +S +   LT  S+
Sbjct: 450 SCVGTKSVPTSSIKEYLTKSSL 471


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 347 TPCAKSPVMMVLNFQNRAS*MTWRNLSKWL 436
           +PC   PV  + +  +R + +T   L KWL
Sbjct: 271 SPCGNCPVSDICDANSRVNPITCEYLDKWL 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,055
Number of Sequences: 5004
Number of extensions: 49028
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)