Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30m19
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    29   0.68 
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   2.1  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    27   2.7  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.3  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   6.3  

>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = -2

Query: 440 CGPH-LASSQARSWQCGPRHPGRHVHEPFCAAHAPPCSHVHVCAQSTPY 297
           C P  L+S+  RS  C P  P +H H      H PP  H H      PY
Sbjct: 147 CRPEPLSSNHVRS--CPPFPPTQHHHPHTRPPHHPPHPHFHNNNYPPPY 193


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +2

Query: 17  YASKNVPYRVKLVPKTAGAKMM----DNARNSQTTASVLLAGPEMFVLTDVLQVDGEKNV 184
           Y SKN+  +  +    A  ++     D   + Q    +L    + F+ TD+  V  +KN+
Sbjct: 713 YFSKNITSKPDIPFAIASMRLYCSLHDTVLSRQFWDLILQVAQQNFITTDIAAVVDDKNI 772

Query: 185 RDPASVLMA 211
             P+ V+ A
Sbjct: 773 PSPSGVIPA 781


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 418 DDAKWGPHCDKDCDCNPETT 477
           DD  W P C+   DCN + T
Sbjct: 282 DDIAWDPQCEYFDDCNSDQT 301


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = -1

Query: 234 SCNVMTTSAISTLAGSLTFFS-PSTCRTSVSTNISGPASSTLAVVCEFLALSIILAPAVL 58
           S +  +T + S+++ S +F S P++  +++S++ S P+SS+ +        S   +  V 
Sbjct: 314 SSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVS 373

Query: 57  GTSFTRYGT 31
            +S T   T
Sbjct: 374 SSSSTSSST 382


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 157 PAGRWGEKCERPCECANGASCHHVTGKCQCEAGFTGEKC 273
           P GR   +CE+   C       H+  KC C +   G KC
Sbjct: 35  PKGRPISQCEK---CRIARITRHLHVKCTCNSRKKGSKC 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,752
Number of Sequences: 5004
Number of extensions: 46624
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)