Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30m19
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    33   0.003
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.3  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   1.7  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              22   4.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.3  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   6.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.2  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 32.7 bits (71), Expect = 0.003
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
 Frame = +1

Query: 70  CQNDGQCKKFTNDCECTAGWTGDV---CANRCPAGRW-GEKCERPCEC--ANGASCHHVT 231
           C+ DG+    +  C C  G+  DV       CP G++  E     CE   A+  S  +  
Sbjct: 234 CKGDGKWYLPSGGCHCKPGYQADVEKQECTECPIGKFKHEAGSHSCEACPAHSKSSDYGF 293

Query: 232 GKCQCEAG-FTGEK 270
            +C+C+ G F  EK
Sbjct: 294 TECRCDPGYFRAEK 307



 Score = 25.8 bits (54), Expect = 0.32
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
 Frame = +1

Query: 319 TCTCEHGGACAAQNGSCTCRPGWRGPHCQLRACDDAKWGPHCDK----DCDCNPETTDLC 486
           T  C+  G     +G C C+PG++    + + C +   G    +     C+  P  +   
Sbjct: 231 TFLCKGDGKWYLPSGGCHCKPGYQA-DVEKQECTECPIGKFKHEAGSHSCEACPAHSKSS 289

Query: 487 DPWTGTCECAAGW 525
           D     C C  G+
Sbjct: 290 DYGFTECRCDPGY 302



 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 496 TGTCECAAGWGGDTCSRQCPLLTYGK 573
           +G C C  G+  D   ++C     GK
Sbjct: 244 SGGCHCKPGYQADVEKQECTECPIGK 269


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +1

Query: 52  CPQNCRCQNDGQCKKFTNDC 111
           CP  C+C ND        DC
Sbjct: 761 CPAGCKCYNDRTWNTNAVDC 780


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 77 FWHRQFWGQASPGTGHSCS 21
          F H+Q +  A+PGT  +C+
Sbjct: 13 FHHQQLFSSANPGTIQACT 31


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 310 CAHTCTCEH--GGACAAQNGSCTCR 378
           CA  C  +   GG+C  +NG C CR
Sbjct: 81  CAIRCLAQRRKGGSC--RNGVCICR 103


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 214 SCHHVTGKCQCEAGFTGEKCL-DICPI 291
           SC +V    +CE  F   KC+ ++ PI
Sbjct: 112 SCSNVDSSDKCEKSFMFMKCMYEVNPI 138


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 419 TTPSGGRTATKTATVILRQ 475
           TT +   TAT TAT +++Q
Sbjct: 117 TTATAAATATTTATGLIKQ 135


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -1

Query: 252 CFTLAFSCNVMTTSAISTLAGSLTFFS 172
           C +L    N+M  + +  + G LT+++
Sbjct: 55  CVSLKNEVNIMMKNVVDIVLGGLTYWA 81


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 168 STCRTSVSTNISGPASSTLAVVCE 97
           +TC     TN+SG +SS   ++ E
Sbjct: 717 TTCNMFRKTNLSGDSSSGTTLLLE 740


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 536 RARDSVHCSLTARGVAL 586
           RAR  +H  L  +G+AL
Sbjct: 158 RARRDIHPELNTQGIAL 174


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 519 RCALARAGPRVAQISCLRITVAVFVAVRPPL 427
           RC+ +  G   +    L +T  + V V PPL
Sbjct: 309 RCSASNPGGEASAEIRLIVTAPLHVEVTPPL 339


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 519 RCALARAGPRVAQISCLRITVAVFVAVRPPL 427
           RC+ +  G   +    L +T  + V V PPL
Sbjct: 309 RCSASNPGGEASAEIRLIVTAPLHVEVTPPL 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,275
Number of Sequences: 438
Number of extensions: 3750
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)