Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30m15
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu... 155 5e-39
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun... 155 5e-39
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2... 28 1.7
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 2.2
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 27 3.9
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 26 6.8
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce... 26 6.8
SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase |Schizosacchar... 25 9.0
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 25 9.0
>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 155 bits (377), Expect = 5e-39
Identities = 86/195 (44%), Positives = 121/195 (62%), Gaps = 2/195 (1%)
Frame = +1
Query: 187 KMEVDYSATCDEKLPLWKSWAAQGKIQ--EAIDQLLALEKQTRTGADMVSTSRILVTVVQ 360
K EVDYS E L KS I +++LL EKQ R +D + +++L+ +
Sbjct: 4 KPEVDYSEKFAE---LQKSLNNLNTIDIDANLEKLLIFEKQVRQASDTSTNTKVLIYIAD 60
Query: 361 IYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRTIT 540
+ F A ++ LN+ +V L K+ QLKQ++ +VQ TY+ D +TKI LIETLRTIT
Sbjct: 61 LLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTIT 120
Query: 541 EGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYGSMDKREKVELILEQMRL 720
+GKIYVEVERARLT +L++I+EE+G++ A +I+ VETYGS D +EKV IL+Q+RL
Sbjct: 121 DGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFILDQVRL 180
Query: 721 CLAIKDYVRTRIISK 765
L DY +K
Sbjct: 181 FLLRSDYYMASTYTK 195
>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 155 bits (377), Expect = 5e-39
Identities = 86/195 (44%), Positives = 121/195 (62%), Gaps = 2/195 (1%)
Frame = +1
Query: 187 KMEVDYSATCDEKLPLWKSWAAQGKIQ--EAIDQLLALEKQTRTGADMVSTSRILVTVVQ 360
K EVDYS E L KS I +++LL EKQ R +D + +++L+ +
Sbjct: 4 KPEVDYSEKFAE---LQKSLNNLNTIDIDANLEKLLIFEKQVRQASDTSTNTKVLIYIAD 60
Query: 361 IYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRTIT 540
+ F A ++ LN+ +V L K+ QLKQ++ +VQ TY+ D +TKI LIETLRTIT
Sbjct: 61 LLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTIT 120
Query: 541 EGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYGSMDKREKVELILEQMRL 720
+GKIYVEVERARLT +L++I+EE+G++ A +I+ VETYGS D +EKV IL+Q+RL
Sbjct: 121 DGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFILDQVRL 180
Query: 721 CLAIKDYVRTRIISK 765
L DY +K
Sbjct: 181 FLLRSDYYMASTYTK 195
>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 27.9 bits (59), Expect = 1.7
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Frame = +1
Query: 184 IKMEVDYSATCDEKLPLWK----SWAAQGKIQEAIDQLLALEKQTRTGADMV-STSRILV 348
+ M + + +KLPLWK ++ +G + L + G D+ IL
Sbjct: 114 VSMAICRAGAAQKKLPLWKYIAENFGTKGPYVLPVPSFNVLNGGSHAGGDLAFQEFMILP 173
Query: 349 TVVQIYFEAKNWSALNDH-IVVLSKRR 426
T + EA W A H + ++K+R
Sbjct: 174 TGAPSFSEAMRWGAETYHTLKSIAKKR 200
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.5 bits (58), Expect = 2.2
Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Frame = +1
Query: 421 RRSQLKQAVVKMVQECYTYVDKTPDKETKI-----KLIETLRTITEGK-IYVEVE--RAR 576
+RS K+ V+ C++ +D P K ++ L +T + ++E K I+ E+E R
Sbjct: 678 QRSLDKEEEKLFVEHCHSMIDVIPSKSAEVYSHLETLTKTFKNLSEAKPIFDEIELLDKR 737
Query: 577 LTHILAKIREEEGNVAEAAKIIQELQVE---TYGSMDKREKVELILEQM 714
L+ ++ + +G++ E+Q E Y EK++L+++ +
Sbjct: 738 LSETKTELSDLQGDLQGLDIRKDEIQSELDTLYLRRANLEKLQLLVKDI 786
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 163 LDASGKIIKMEVDYSATCDEKLPLWKSWAAQGKI-QEAIDQL 285
LDA K I E +S E+L ++ W +QG I ++ DQL
Sbjct: 450 LDAESKGIAYEYKHSTFFSEQLTAFEVWLSQGLISRKPPDQL 491
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +1
Query: 130 FKMTTNGDIGGLDASGKIIKMEVDYSATCDEKLPLWKSWAAQGKIQEAIDQLL 288
+KM + + + AS + E + A C KL WK QE++ +L
Sbjct: 1581 YKMGDSSKLVDILASSSVSSEERSFLARCFHKLGKWKKSLQDSVNQESVRDIL 1633
>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 292
Score = 25.8 bits (54), Expect = 6.8
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 472 TYVDKTPDKETKIKLIETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAK 636
T+ K ++ TK++ +R I + + A+ L K REEE AEAAK
Sbjct: 29 TFGLKNKNRSTKVQA--KIRQIEQNAAASGSKDAKRQEALRKRREEEKRAAEAAK 81
>SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 178 KIIKMEVDYSATCDEKLPLWKSWAAQG 258
+IIK++++ + CD++L + W A+G
Sbjct: 159 RIIKIKLESARICDQRLNNVQKWNARG 185
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/56 (21%), Positives = 29/56 (51%)
Frame = +1
Query: 484 KTPDKETKIKLIETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQEL 651
+TPD +++K E + + + + Y++ ++A + + + G+ A A K E+
Sbjct: 370 RTPDILSRLKDAEKSKELQDREAYIDPDKAEESRVKGNELFKSGDFANAIKEYTEM 425
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,049,636
Number of Sequences: 5004
Number of extensions: 61820
Number of successful extensions: 179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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