Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30m03
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 31 0.12
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 28 1.1
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 28 1.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.6
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 27 3.4
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 27 3.4
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 3.4
SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc... 26 6.0
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 6.0
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 6.0
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 31.5 bits (68), Expect = 0.12
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +3
Query: 555 RRYRLRINGSANRGHHNTLLQGKTDHGS----EDSPDGSFSRKLLDTN 686
RR RL NG+AN HN D GS + + DG FS+ + N
Sbjct: 218 RRKRLVFNGNANESQHNLKRMSSGDSGSSVKQQSTRDGPFSKSFPNGN 265
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +1
Query: 475 VAGILLSSYSTDATTNDHIVNIFSGIFAGIGCALTGQQTEVIITHF 612
VA L + + NDH VN G AGI LT + + T F
Sbjct: 87 VAFSKLKHLTENLAMNDHAVNFLCGTSAGIFATLTSYPLDTMRTKF 132
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = -3
Query: 464 KPASAMNLGMLNIFTIARHHDSKSNLMTTIITGTRAMSTSHIFNNSSFSWPSSLIAF 294
KP MN + T++R S S T +T T TS+ F+N + S+L+AF
Sbjct: 379 KPTLLMNTSDITRVTLSRVGMSVSAARTFDLTFTLRSGTSYQFSNINRVEQSALVAF 435
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 2.6
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = +3
Query: 531 CEYILWHIRRYRLRINGSANRGHH 602
C ++ ++ RR+++R++ SAN G +
Sbjct: 310 CIFLYFYFRRFKIRMSDSANEGKY 333
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +1
Query: 130 ENRTEDLHLDRVVASQPEIGPT 195
++RT+D+H+D+++ PE P+
Sbjct: 280 KDRTQDIHIDKLLIDHPEKRPS 301
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 26.6 bits (56), Expect = 3.4
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = -3
Query: 524 SLVVASVE*LESRMPATVRHKPASAMNLGMLNIFT--IARHHDSKSNLMTTIITGTRAMS 351
S+ ++S+ + S MP HKPAS N+G + I + +R S S + + + S
Sbjct: 480 SVSLSSLSNVNSSMP----HKPASQSNVGPVRISSNRRSRKFSSSSRVSVSNLLAGSPPS 535
Query: 350 TSHIFNNSSFSWPSSLIAFNM 288
S ++S S+ ++ AF++
Sbjct: 536 PSSSTKSASSSYSTTTPAFSI 556
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 148 LHLDRVVASQPEIGPTPPDGGYGW 219
L++D+VV S+P GP PP W
Sbjct: 520 LNVDQVVMSKPAGGPKPPGPNPHW 543
>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 338 FNNSSFSWPSSLIAFNMINPYNVNTAGTVMW 246
F S F + ++ M+ P N+ TAGTV W
Sbjct: 87 FRMSCFVLTNLVVTAGMLQP-NLGTAGTVFW 116
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 347 SHIFNNSSFSWPSSLIAFNMIN 282
++IF+ SFSW SS I F N
Sbjct: 177 ANIFSKLSFSWISSFIKFGYTN 198
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1
Query: 472 TVAGILLSSYSTDATTNDHIVNIFSGI 552
+V GI+L S S D HIVN SGI
Sbjct: 1101 SVVGIILGSPSVDNYGQMHIVNHSSGI 1127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,959
Number of Sequences: 5004
Number of extensions: 66942
Number of successful extensions: 169
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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