Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30m03
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0349 + 22565405-22566279,22567774-22569772,22570360-225704... 30 2.0
05_01_0493 + 4113869-4116728,4116859-4117370 29 3.5
04_04_1268 - 32262994-32263017,32263411-32263488,32263653-322638... 29 4.7
01_06_0459 + 29538025-29538579,29539190-29539354,29539448-295395... 28 6.2
01_03_0088 + 12327339-12328092,12329474-12329601,12330249-123304... 28 6.2
12_02_0629 - 21360831-21361310,21361391-21361663,21362212-213624... 28 8.2
07_01_0072 - 525351-525494,526029-526256,526345-526458,527616-52... 28 8.2
06_03_1028 - 27004229-27004566,27005554-27005772,27006254-270063... 28 8.2
05_02_0137 + 6996336-6996415,6998240-6998351,6999292-6999453,699... 28 8.2
>11_06_0349 +
22565405-22566279,22567774-22569772,22570360-22570478,
22570835-22571117
Length = 1091
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 469 LTVAGILLSSYST--DATTNDHIVNIFSGIFAGIGCALTGQQTEVIITHFFR 618
+ VAG++ S + D T + H+V++ + A +G LT + II H ++
Sbjct: 389 VVVAGLIASKMKSKIDLTLDQHLVDVDEALSAELGSNLTTEGVTQIINHCYK 440
>05_01_0493 + 4113869-4116728,4116859-4117370
Length = 1123
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +1
Query: 121 DRVENRTEDLHLDRVVASQPEIGPTPPDGGYGWLIVVSAVIYHITVPAVLTLYGLIILKA 300
DR E D L RV P P G YG++ + IT + + +G+++L+
Sbjct: 918 DRYEACLADFGLARVADDGASSSPPPFAGSYGYIAPEYGCMTKITTKSDVYSFGVVLLEM 977
Query: 301 I 303
I
Sbjct: 978 I 978
>04_04_1268 -
32262994-32263017,32263411-32263488,32263653-32263800,
32263890-32264127,32264210-32264420,32264499-32264680,
32264765-32264866,32265009-32266317,32266906-32266988,
32267436-32267559
Length = 832
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/59 (27%), Positives = 35/59 (59%)
Frame = +1
Query: 379 VVIRLLLESWCRAIVKIFNMPRFMALAGLCLTVAGILLSSYSTDATTNDHIVNIFSGIF 555
V+I LLL S+C+ ++ + R ++ +G ++ +G+ + + AT+N ++F GI+
Sbjct: 91 VLIYLLLISFCKCDDQLTQVNRLISPSGKLVSKSGVFALGFFSPATSNQ---SLFLGIW 146
>01_06_0459 +
29538025-29538579,29539190-29539354,29539448-29539585,
29539685-29539836,29539949-29540057,29540281-29540379,
29541051-29541116,29541208-29541315,29541428-29541553
Length = 505
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 493 SSYSTDATTNDHIVNIFSGIFAGIGCALTGQQTEVIITHF 612
+ +STD TT D +V IF G + +Q E+ +THF
Sbjct: 262 TGFSTDPTTVDQLVEANPAIFT--GSEVRVEQPEMPLTHF 299
>01_03_0088 +
12327339-12328092,12329474-12329601,12330249-12330474,
12332638-12332765,12332880-12333033,12333408-12333841
Length = 607
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +2
Query: 428 YSTCRGSWRLPAYA*R*PAFCSLATPLMPQPMT 526
YS C R P A R PAF A P MP+P T
Sbjct: 134 YSECP---RAPPVAIREPAFLPFAPPTMPRPWT 163
>12_02_0629 -
21360831-21361310,21361391-21361663,21362212-21362488,
21362590-21362735,21363207-21363416
Length = 461
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +1
Query: 277 YGLIILKAIREEGHEKEELLKIWDVDIALVPVIMVVIRLLLES 405
+G + +KAI + GH+K LK+ ++ A+ I+ + RLL E+
Sbjct: 296 FGFLHIKAIDDAGHDKAVKLKVLGLE-AVDRAIVQLARLLWEA 337
>07_01_0072 -
525351-525494,526029-526256,526345-526458,527616-527747,
529086-529265,529376-529507,529879-530055,530536-530718,
530894-530938,531192-531306,531770-532128,532700-532939
Length = 682
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 567 LRINGSANRGHHNTLLQGKTDHGSEDSPDG 656
+R G A G+H+ ++G+ D+G E +G
Sbjct: 68 VRSEGHARSGYHSEEVEGEADNGGEGEAEG 97
>06_03_1028 -
27004229-27004566,27005554-27005772,27006254-27006390,
27007172-27007509
Length = 343
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 294 EGDQRRGP*KRRIVENMGRRHSPRTSNYGCHKVTLGVMVSSDREDIQHA 440
E DQ + +RR+ ++ RR P+T + TL + DR+ I A
Sbjct: 119 EFDQEKRSCRRRLSDHNARRRKPQTDVFAFGSGTLPRSLFDDRQQISFA 167
>05_02_0137 +
6996336-6996415,6998240-6998351,6999292-6999453,
6999755-6999874,6999947-7000108
Length = 211
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +1
Query: 352 DIALVPVIMVVIRLLLESWCRAIVKIFNMPRFMALAGLCLTVAGILLSSYSTDATTNDHI 531
+ + +P I+ + L SW VK + + LA C+TV SS+S N HI
Sbjct: 41 EFSCIPYILALFSCLTYSWYGFPVKQVMLMASLILAVFCMTV---FFSSFSIH---NHHI 94
Query: 532 VNIFSG 549
+F G
Sbjct: 95 RKVFVG 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,282,045
Number of Sequences: 37544
Number of extensions: 454715
Number of successful extensions: 1199
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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