Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30m03
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29379-7|ABC71826.1| 710|Caenorhabditis elegans Patterned expre... 55 6e-08
U29379-6|AAF99981.3| 677|Caenorhabditis elegans Patterned expre... 55 6e-08
U29379-5|ABC71825.1| 777|Caenorhabditis elegans Patterned expre... 55 6e-08
AF026202-6|AAB71245.2| 594|Caenorhabditis elegans Hypothetical ... 55 6e-08
Z78545-2|CAB01766.1| 596|Caenorhabditis elegans Hypothetical pr... 53 2e-07
AF125952-1|AAD14701.1| 571|Caenorhabditis elegans Hypothetical ... 52 3e-07
AC006722-7|AAK68412.2| 544|Caenorhabditis elegans Hypothetical ... 52 3e-07
U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical p... 51 7e-07
Z70206-2|CAA94126.2| 771|Caenorhabditis elegans Hypothetical pr... 44 8e-05
Z47073-1|CAA87371.3| 931|Caenorhabditis elegans Hypothetical pr... 29 2.4
U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical pr... 28 7.4
>U29379-7|ABC71826.1| 710|Caenorhabditis elegans Patterned
expression site protein22, isoform c protein.
Length = 710
Score = 54.8 bits (126), Expect = 6e-08
Identities = 38/172 (22%), Positives = 82/172 (47%)
Frame = +1
Query: 175 QPEIGPTPPDGGYGWLIVVSAVIYHITVPAVLTLYGLIILKAIREEGHEKEELLKIWDVD 354
+P + P PDGGYGW+IV +A + ++ V + T + K +E +++ + L ++
Sbjct: 62 EPLLVPQAPDGGYGWVIVFAAFMSNLVVDGISTAFS--EFKQSYKERYQESDGLTVF--- 116
Query: 355 IALVPVIMVVIRLLLESWCRAIVKIFNMPRFMALAGLCLTVAGILLSSYSTDATTNDHIV 534
+ +++ LL+ A+ + R++ +AG ++ +++ A+ N ++
Sbjct: 117 ---IGSLIIGTYLLVGPLVSALCNKYEQ-RYVVMAGGLISGIAFMIA----PASPNIYVF 168
Query: 535 NIFSGIFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPIL 690
+ G+ G+G + V++ +F K MA I VG L+P++
Sbjct: 169 MLIYGVMGGLGFGMIYLPAIVVVGFYFDSKRAMATGISVAGSGVGTFLVPLI 220
>U29379-6|AAF99981.3| 677|Caenorhabditis elegans Patterned
expression site protein22, isoform a protein.
Length = 677
Score = 54.8 bits (126), Expect = 6e-08
Identities = 38/172 (22%), Positives = 82/172 (47%)
Frame = +1
Query: 175 QPEIGPTPPDGGYGWLIVVSAVIYHITVPAVLTLYGLIILKAIREEGHEKEELLKIWDVD 354
+P + P PDGGYGW+IV +A + ++ V + T + K +E +++ + L ++
Sbjct: 7 EPLLVPQAPDGGYGWVIVFAAFMSNLVVDGISTAFS--EFKQSYKERYQESDGLTVF--- 61
Query: 355 IALVPVIMVVIRLLLESWCRAIVKIFNMPRFMALAGLCLTVAGILLSSYSTDATTNDHIV 534
+ +++ LL+ A+ + R++ +AG ++ +++ A+ N ++
Sbjct: 62 ---IGSLIIGTYLLVGPLVSALCNKYEQ-RYVVMAGGLISGIAFMIA----PASPNIYVF 113
Query: 535 NIFSGIFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPIL 690
+ G+ G+G + V++ +F K MA I VG L+P++
Sbjct: 114 MLIYGVMGGLGFGMIYLPAIVVVGFYFDSKRAMATGISVAGSGVGTFLVPLI 165
>U29379-5|ABC71825.1| 777|Caenorhabditis elegans Patterned
expression site protein22, isoform b protein.
Length = 777
Score = 54.8 bits (126), Expect = 6e-08
Identities = 38/172 (22%), Positives = 82/172 (47%)
Frame = +1
Query: 175 QPEIGPTPPDGGYGWLIVVSAVIYHITVPAVLTLYGLIILKAIREEGHEKEELLKIWDVD 354
+P + P PDGGYGW+IV +A + ++ V + T + K +E +++ + L ++
Sbjct: 62 EPLLVPQAPDGGYGWVIVFAAFMSNLVVDGISTAFS--EFKQSYKERYQESDGLTVF--- 116
Query: 355 IALVPVIMVVIRLLLESWCRAIVKIFNMPRFMALAGLCLTVAGILLSSYSTDATTNDHIV 534
+ +++ LL+ A+ + R++ +AG ++ +++ A+ N ++
Sbjct: 117 ---IGSLIIGTYLLVGPLVSALCNKYEQ-RYVVMAGGLISGIAFMIA----PASPNIYVF 168
Query: 535 NIFSGIFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPIL 690
+ G+ G+G + V++ +F K MA I VG L+P++
Sbjct: 169 MLIYGVMGGLGFGMIYLPAIVVVGFYFDSKRAMATGISVAGSGVGTFLVPLI 220
>AF026202-6|AAB71245.2| 594|Caenorhabditis elegans Hypothetical
protein C10E2.6 protein.
Length = 594
Score = 54.8 bits (126), Expect = 6e-08
Identities = 43/163 (26%), Positives = 71/163 (43%)
Frame = +1
Query: 190 PTPPDGGYGWLIVVSAVIYHITVPAVLTLYGLIILKAIREEGHEKEELLKIWDVDIALVP 369
P PPDGG+GW++V+ + H+ + +G ++++ + EE H + AL+
Sbjct: 15 PLPPDGGWGWVVVLGSFFVHVFADGFVYSFG-VLVETLMEEFHASNTM-------AALII 66
Query: 370 VIMVVIRLLLESWCRAIVKIFNMPRFMALAGLCLTVAGILLSSYSTDATTNDHIVNIFSG 549
++ + L A+ + R + G + G LS + AT HIV I G
Sbjct: 67 SLLTGLTLGSGPLASAVCNKYGC-RITTITGAGVAFVGCALSYF---ATAMWHIV-ITVG 121
Query: 550 IFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCL 678
+ G G L VI+T +F K ++A I VG L
Sbjct: 122 VIMGTGFGLMYCPAIVIVTMYFENKRSLATGIAVAGAGVGTVL 164
>Z78545-2|CAB01766.1| 596|Caenorhabditis elegans Hypothetical
protein M03B6.2 protein.
Length = 596
Score = 53.2 bits (122), Expect = 2e-07
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 1/166 (0%)
Frame = +1
Query: 196 PPDGGYGWLIVVSAVIYHITVPAVLTLYGLIILKA-IREEGHEKEELLKIWDVDIALVPV 372
PPDGGYGW IV ++ + ++ V V+ G I+ A + G I + A+
Sbjct: 33 PPDGGYGWAIVAASFLLNMIVDGVIFTVGKILQPAWVHSFG--------ISEASAAMTMS 84
Query: 373 IMVVIRLLLESWCRAIVKIFNMPRFMALAGLCLTVAGILLSSYSTDATTNDHIVNIFSGI 552
I+ + +F R +ALAG + G LLS + N +++ + G+
Sbjct: 85 ILSGCYFFAGPIASVLCNVFGC-RQVALAGSLIAALGFLLSI----SAPNIYVLYVSFGL 139
Query: 553 FAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPIL 690
AG G + VII+ +F +K ++A I +G + +L
Sbjct: 140 IAGAGFGMMYLPAIVIISQYFAKKRSVATGIAVCGSGIGTTVFALL 185
>AF125952-1|AAD14701.1| 571|Caenorhabditis elegans Hypothetical
protein C01B4.9 protein.
Length = 571
Score = 52.4 bits (120), Expect = 3e-07
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 7/179 (3%)
Frame = +1
Query: 181 EIGP-TPPDGGYGWLIVVSAVIYHITVPAVLTLYGLIILKAIREEGHEKEELLKIWDVDI 357
E+G TPPDGGYGW++V ++ + ++ V V+ G I L+ IW
Sbjct: 33 EVGKVTPPDGGYGWVVVAASFLVNMAVDGVIYTCGKI--------------LVPIWADQF 78
Query: 358 ALVPVIMVVIRLLLESW------CRAIVKIFNMPRFMALAGLCLTVAGILLSSYSTDATT 519
V VI +L + + V +F + R +A+AG L LLS + A+T
Sbjct: 79 GSTSVAGAVISILTGCYYLAGPLASSFVNVFGI-RSVAIAGSILATTAFLLSRF---AST 134
Query: 520 NDHIVNIFSGIFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPILVG 696
+ +F G+ GIG + VI++ +F +K ++A I +G + + G
Sbjct: 135 IWELYLLF-GVLGGIGFGCMYLPSIVILSTYFAKKRSVATGIAVCGSGIGTMVFSTING 192
>AC006722-7|AAK68412.2| 544|Caenorhabditis elegans Hypothetical
protein Y19D10A.12 protein.
Length = 544
Score = 52.4 bits (120), Expect = 3e-07
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 7/179 (3%)
Frame = +1
Query: 181 EIGP-TPPDGGYGWLIVVSAVIYHITVPAVLTLYGLIILKAIREEGHEKEELLKIWDVDI 357
E+G TPPDGGYGW++V ++ + ++ V V+ G I L+ IW
Sbjct: 33 EVGKVTPPDGGYGWVVVAASFLVNMAVDGVIYTCGKI--------------LVPIWADQF 78
Query: 358 ALVPVIMVVIRLLLESW------CRAIVKIFNMPRFMALAGLCLTVAGILLSSYSTDATT 519
V VI +L + + V +F + R +A+AG L LLS + A+T
Sbjct: 79 GSTSVAGAVISILTGCYYLAGPLASSFVNVFGI-RSVAIAGSILATTAFLLSRF---AST 134
Query: 520 NDHIVNIFSGIFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPILVG 696
+ +F G+ GIG + VI++ +F +K ++A I +G + + G
Sbjct: 135 IWELYLLF-GVLGGIGFGCMYLPSIVILSTYFAKKRSVATGIAVCGSGIGTMVFSTING 192
>U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical
protein T02G5.12 protein.
Length = 556
Score = 51.2 bits (117), Expect = 7e-07
Identities = 40/160 (25%), Positives = 68/160 (42%)
Frame = +1
Query: 190 PTPPDGGYGWLIVVSAVIYHITVPAVLTLYGLIILKAIREEGHEKEELLKIWDVDIALVP 369
P PPDGG+GW++V+ + H+ + +G++ K + E + +L+
Sbjct: 12 PLPPDGGWGWVVVIGSFFIHVFADGFVYSFGILAEKLMIEFNSN--------NTMTSLIV 63
Query: 370 VIMVVIRLLLESWCRAIVKIFNMPRFMALAGLCLTVAGILLSSYSTDATTNDHIVNIFSG 549
++ L A+ + R + G + G LLS ++T+ H V I G
Sbjct: 64 SMLTGFTLGAGPLASAVCNKYGC-RITTIIGAGVAFVGCLLSCFATEIW---HFV-ISVG 118
Query: 550 IFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVG 669
+ GIG L VI+T +F K ++A I VG
Sbjct: 119 VIMGIGFGLVYCPAIVIVTMYFESKRSLATGIAVAGAGVG 158
>Z70206-2|CAA94126.2| 771|Caenorhabditis elegans Hypothetical
protein C49F8.2 protein.
Length = 771
Score = 44.4 bits (100), Expect = 8e-05
Identities = 34/168 (20%), Positives = 70/168 (41%)
Frame = +1
Query: 190 PTPPDGGYGWLIVVSAVIYHITVPAVLTLYGLIILKAIREEGHEKEELLKIWDVDIALVP 369
P DGGYGWL+V+++ + H +G++ +K +E + ++++
Sbjct: 64 PVYKDGGYGWLVVLASFLMHAVCDGASFCFGIVFVKI--QEHFQCGRF-------VSMIT 114
Query: 370 VIMVVIRLLLESWCRAIVKIFNMPRFMALAGLCLTVAGILLSSYSTDATTNDHIVNIFSG 549
M + L+ S IV R + G + +++ + ++ I G
Sbjct: 115 ASMFLSLPLIMSPVAGIVSDILGCRMSIIIGASICTVSCIIAMF----CSHIFFFMISFG 170
Query: 550 IFAGIGCALTGQQTEVIITHFFREKLTMAQRIVRMAPSVGNCLIPILV 693
+ G+G + VI+T++F ++ +A VG + PIL+
Sbjct: 171 LGCGVGMSFIYNAAIVIVTYYFEKRRGLATSFAVSGTGVGTVIYPILL 218
>Z47073-1|CAA87371.3| 931|Caenorhabditis elegans Hypothetical
protein ZC506.1 protein.
Length = 931
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 520 NDHIVNIFSGIFAGIGCALTGQQTEVIITHFFREKLTMAQ-RIVRMAPSVGNCLIP 684
+DH+V++F +G ++ ++ + +LT ++++MA VGN L+P
Sbjct: 115 SDHVVSVFETNIRVLGGLISAHVLAELVKEKYPNRLTTYDNQLLKMATEVGNRLLP 170
>U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical
protein C54G7.4 protein.
Length = 1199
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 481 GILLSSYSTDATTNDHIVNIFSGIFAGIGCALTGQQTEVIITHFF 615
GI+ Y TD T + + + F C L +Q + +I H+F
Sbjct: 388 GIMFYDYKTDEKTVKTVTHFENMAFYREHCVLINRQDDGVIPHYF 432
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,095,664
Number of Sequences: 27780
Number of extensions: 384915
Number of successful extensions: 1090
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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