Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30m03
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.40 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.52 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.5  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    21   8.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 88  ENPTLTDARQTDRVENRTEDLHLDRVVASQ 177
           E PT ++A  TD  + RTE++ LDR   +Q
Sbjct: 325 EYPT-SNATDTDGTKERTEEVALDRTPVTQ 353


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 124 RVENRTEDLHLDRVVASQPEIGPTPPDGGYGW 219
           RV+N T+  + D      P+  P PPD   GW
Sbjct: 646 RVQNATDTTNFDEY---PPDSDPPPPDDISGW 674


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -3

Query: 413 RHHDSKSNLMTTIITGTRAMSTSHIFNNSSFSWPSSLIAFNMINPYNVNTAGT 255
           R    + N ++ I   +R +        + F W + L     IN YNVN+ GT
Sbjct: 411 RRRTPRYNSVSKIDRASRIVFPLFFLAINVFYWFAYLSRSERINYYNVNSNGT 463


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 459 GKRHEPRHVEYLHDRSTP*LQE*PYDNHN 373
           GK  EP   E   D S+P   + P  NH+
Sbjct: 612 GKYEEPTVGEISQDGSSPHFHQSPSQNHS 640


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 256 VPAVLTLYGLIILKAIREEG 315
           +PAVL+  G+I+   ++ EG
Sbjct: 378 LPAVLSRIGIILASPLKREG 397


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 225 YQPTVTTVRWRWSNFWL 175
           Y P++  V   W +FW+
Sbjct: 249 YLPSILIVMLSWVSFWI 265


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 582 SANRGHHNTLLQGKTDHGSEDSPDGSF 662
           S +  H  +L++  +  G+ D+P+G F
Sbjct: 36  SQDTSHFASLVRNASVSGNLDAPEGGF 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,402
Number of Sequences: 438
Number of extensions: 5617
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)