Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30m01
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...   109   3e-25
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...   102   6e-23
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    29   0.47 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        29   0.63 
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    29   0.83 
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ...    27   2.5  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   5.8  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    26   5.8  
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    25   7.7  

>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score =  109 bits (263), Expect = 3e-25
 Identities = 72/209 (34%), Positives = 105/209 (50%), Gaps = 5/209 (2%)
 Frame = +2

Query: 71  NSVDNEIKASALDLIGNTPIVALDRLHPGPG-RILAKCEFMNPGASIKCRSSLCMIKKAL 247
           +S++ +I      LIGNT +V +  L    G  ILAK EF+NPG S K R +L MI+ A 
Sbjct: 36  DSLEEDIVNGVEGLIGNTKMVRIKSLSQATGCDILAKAEFLNPGNSPKDRVALQMIRTAE 95

Query: 248 ASGELKPKEP--VVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCV 421
            +G+L P +   V E T+G+ G  +A++C  LG+   + M    S +++  +E LGA   
Sbjct: 96  ENGDLVPYQSNAVYEGTAGSTGISIAMLCCSLGYDSRIYMPSDQSKEKSDILELLGAHVQ 155

Query: 422 RVPQVEGTYGNVTLNDVK--AVEEVGLRIVKETGAYYVNQFNNDANSESHYQTTGPEIWR 595
           RV        N  +N  +  A        +   G Y+ NQF N AN ++H+ +TGPEIWR
Sbjct: 156 RVTPAPIVDPNHFVNTARRNAANHTVDESIPGKG-YFANQFENPANWQAHFNSTGPEIWR 214

Query: 596 QTGHRVDXXXXXXXXXXXXXXXXRYLKEK 682
           Q   ++D                RYLK K
Sbjct: 215 QCAGKLDAFIAGSGTGGTIAGISRYLKSK 243


>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score =  102 bits (244), Expect = 6e-23
 Identities = 66/199 (33%), Positives = 95/199 (47%), Gaps = 1/199 (0%)
 Frame = +2

Query: 89  IKASALDLIGNTPIVALDRLHPGPG-RILAKCEFMNPGASIKCRSSLCMIKKALASGELK 265
           I +  +  IG TP++ L+ L    G  ILAK EF NPG S+K R++  +++ A   G+L 
Sbjct: 13  IVSGFIGAIGRTPLIRLNTLSNETGCNILAKAEFQNPGGSVKDRAAYYVVRDAEKKGKLS 72

Query: 266 PKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVPQVEGT 445
               +VE T+GN G GLA +    G+   + M    S  +   ++ LGA+   VP    +
Sbjct: 73  RGGTIVEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTLKFLGAEVHPVPVAPFS 132

Query: 446 YGNVTLNDVKAVEEVGLRIVKETGAYYVNQFNNDANSESHYQTTGPEIWRQTGHRVDXXX 625
                 N +    +          A + +QF+N AN  SHY+TTGPEIW QT   VD   
Sbjct: 133 ------NPLNYNHQARRHAESTPNASWTDQFDNVANLLSHYETTGPEIWDQTKGTVDGFT 186

Query: 626 XXXXXXXXXXXXXRYLKEK 682
                        +YLKEK
Sbjct: 187 CSTGTGGTFAGVTKYLKEK 205


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 320 VVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVPQVEGTYG 451
           V+CA++ HP  + +SK NS ++A   E  GA   R+ +  G  G
Sbjct: 233 VLCAIISHPADVMVSKLNSNKKA--GEGAGAAAARIYKEIGFSG 274


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 260  LKPKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAK 415
            L  KEPV+ V  G+ GCG   VC +L   L   +   N+ Q   + + +GA+
Sbjct: 1183 LLAKEPVLLV--GDTGCGKTTVCQILAECLHKELHIINAHQDTENGDIIGAQ 1232


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -1

Query: 387 AL*ALFPFDMASVSG*PNTAHTTASPHP*FPDVTSTTGSLGFSSP 253
           AL +L+P    + SG   +  TT +  P    V ST+GS  FSSP
Sbjct: 23  ALRSLWPPPSLNESGDTRSVWTTHTGEPVASSVLSTSGSNNFSSP 67


>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 323

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +2

Query: 167 ILAKCEFMNPGASIKCRSSLCMIKKALASGELKPKEPVVEVTSGNQGCGLAVVCAVLGHP 346
           +  KCE      + K R +L  + +     E + K  V+  +SGN    +A+   +LG P
Sbjct: 43  VFFKCENFQKMGAFKFRGALNALSQL---NEAQRKAGVLTFSSGNHAQAIALSAKILGIP 99

Query: 347 LTLAM 361
             + M
Sbjct: 100 AKIIM 104


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +2

Query: 56  AMANNNSVDNEIKASALDLIGNTPIVALDRLHPGPGRILAKCEFMNPGASIKCRSSLCM 232
           +   N   +  +K +   L+  T I+  D+L P  GR++   EF     S+K  SS+ +
Sbjct: 729 SFTENERCEKVLKINESSLLVGTSIIEQDKLVPVNGRLIL-LEFEKELQSLKVVSSMVL 786


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
 Frame = +2

Query: 89  IKASALDLIGNTPIVALDRLHPGPG-RILAKCEFMNPGASIKCRSSLCMIKKALASGELK 265
           + ++  ++I  TP+     +    G  +  K E + P  S K R +     K  +  +  
Sbjct: 103 LTSNVYEVIKETPLTKGVVISESTGVPVYLKREDLTPVFSFKIRGAH---NKMASLDKQS 159

Query: 266 PKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGA 412
            K  V+  ++GN   G+A     LG   T+ M +     +  +++ LGA
Sbjct: 160 LKNGVIACSAGNHAQGVAYSARTLGVKATIVMPQNTPEIKWRNVKRLGA 208


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
 Frame = +2

Query: 191 NPGA-SIKCRSSLCMIKKALASGELKPKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSK 367
           NP A  + C     +++   A G     + +      ++    A+      +P+ L M++
Sbjct: 40  NPAALPLPCLEKTMLVRSFDAQGLKDAVDELESNLKSSEDQAYALCIDSFSNPIGLLMAQ 99

Query: 368 GNSAQRAIHMEALGAKC 418
           GN +     M  LG KC
Sbjct: 100 GNISFAHAFMMTLGRKC 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,382
Number of Sequences: 5004
Number of extensions: 60447
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)