Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30l23
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.87 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   0.87 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   6.1  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   8.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 450 TNICEELGKEARAEAQRVAELHKAGSQLRIDLIEKGNKKR 569
           TNI EE+ KEA+   + +  L     Q + D+ E    KR
Sbjct: 433 TNISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKR 472


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 450 TNICEELGKEARAEAQRVAELHKAGSQLRIDLIEKGNKKR 569
           TNI EE+ KEA+   + +  L     Q + D+ E    KR
Sbjct: 139 TNISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKR 178


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 669 SFLDHSLEALFQPLFFLLQICLF 601
           SFL + L+ALFQP    L + LF
Sbjct: 38  SFLKNQLQALFQPTDNKLAMKLF 60


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 669 SFLDHSLEALFQPLFFLLQICLF 601
           SFL + L+ALFQP    L + LF
Sbjct: 38  SFLKNQLQALFQPTDNKLAMKLF 60


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 669 SFLDHSLEALFQPLFFLLQICLF 601
           SFL + L+ALFQP    L + LF
Sbjct: 38  SFLKNQLQALFQPTDNKLAMKLF 60


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 384 WNSANSEAGVRHLYNGKHRLYKP 316
           WN  +   GVR L    HRL+KP
Sbjct: 87  WN-VSDYGGVRDLRIPPHRLWKP 108


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/47 (27%), Positives = 18/47 (38%)
 Frame = -2

Query: 461 TNVSTGRRISVFICSITAITDSVINPGTRQILRPVSGICTMENTVYT 321
           T +   RR S  IC +  + +SV        +   S   TME    T
Sbjct: 373 TIIDVSRRRSSLICDVYGVNESVSYERGSMTVSVTSKPSTMERQTQT 419


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 648 EALFQPLFFLLQIC 607
           EALFQP F  ++ C
Sbjct: 34  EALFQPSFLGMEAC 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,676
Number of Sequences: 438
Number of extensions: 3078
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)