Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30l18
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1105 + 30438140-30438350,30438448-30438926 38 0.007
05_04_0254 - 19444409-19444621,19444724-19444887,19444974-194450... 36 0.027
07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155 35 0.047
01_05_0710 + 24492337-24493053 33 0.19
02_01_0302 - 2021221-2023305 30 1.3
01_07_0095 + 41053562-41053603,41054609-41054846,41055064-410553... 30 1.3
11_06_0192 + 21128298-21128829,21129341-21129407,21131169-211312... 30 1.8
03_06_0292 - 32886148-32886354,32886997-32887154,32887265-328873... 30 1.8
04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733 29 2.3
08_01_1022 + 10323158-10323393,10323486-10323531,10325887-103259... 29 3.1
03_05_0306 - 22956474-22956980 29 4.1
12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395... 28 5.4
10_08_0888 - 21317163-21317687,21318044-21318153,21318258-21318408 28 7.1
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278... 28 7.1
08_01_0445 + 3942820-3943030,3943719-3943853,3943942-3944150,394... 28 7.1
05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722 28 7.1
05_03_0122 - 8669422-8669609,8669759-8670111,8670669-8670824,867... 28 7.1
06_01_1084 + 8883301-8883515,8883736-8884063,8884764-8885022,888... 27 9.4
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 27 9.4
04_01_0031 + 381389-381841 27 9.4
03_01_0201 - 1592180-1592218,1592517-1592602,1592966-1593064,159... 27 9.4
02_02_0379 + 9565001-9565515,9565553-9565833,9565884-9566084,956... 27 9.4
>03_05_1105 + 30438140-30438350,30438448-30438926
Length = 229
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +1
Query: 499 IRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMF 630
+R AF+RKVYAIL Q+++T+ ++ ++ RP ++ P F
Sbjct: 15 LRWAFVRKVYAILSIQMLLTIAVASVVVFVRPVALFFVSTPAGF 58
>05_04_0254 -
19444409-19444621,19444724-19444887,19444974-19445087,
19446086-19446395
Length = 266
Score = 35.9 bits (79), Expect = 0.027
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 475 GFDFTEKSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNP 621
G E ++R F+RKVY IL QL++T AL + H ++ +P
Sbjct: 43 GISRGESALRWGFVRKVYGILAAQLLLTTAVSALTVLHPTLNATLSSSP 91
>07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155
Length = 220
Score = 35.1 bits (77), Expect = 0.047
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +1
Query: 448 SVGEDGEVKGFDFTEKSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPT--KVWVAQNP 621
+VG G + +R AFIRKVYAI+ QL+VT+ IA +Y P + ++A+ P
Sbjct: 25 AVGVAGVACTYMIERPELRWAFIRKVYAIVATQLVVTVA-IAAAVYSVPAIRRFFLARTP 83
>01_05_0710 + 24492337-24493053
Length = 238
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = -2
Query: 441 RWDIARFTVTSAAICRLEARLRGRISALRVCSTRGIRSSWRVSSTLR 301
R D A F V A +CRLE R ++ALR + GIR+S ++ ++R
Sbjct: 153 RPDSATFAVAVAGLCRLEDP-RNALAALREMAVDGIRTSAKLRESVR 198
>02_01_0302 - 2021221-2023305
Length = 694
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/67 (29%), Positives = 25/67 (37%)
Frame = +3
Query: 180 GPTKLREHVSESRRTVPSGRGVPARWTVPARWTVPTGWRLPARWSLPSRRSVSPGWSIPA 359
G H S T PS P+ T P+ + P G P+ S PS + P S P
Sbjct: 476 GKPSTPSHPSPPGSTTPSYPSPPSSSTTPSYHSPPQGHTTPSHPSPPSSSTAPPSHSPPQ 535
Query: 360 GRICAPS 380
PS
Sbjct: 536 STPTHPS 542
>01_07_0095 +
41053562-41053603,41054609-41054846,41055064-41055312,
41055419-41055469,41056044-41056256,41056305-41056367,
41056422-41056474,41056953-41057067,41057150-41057404,
41057531-41058618
Length = 788
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 484 FTEKSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFW 633
FT S+R AFI +Y L+ Q M F++ + PT + + +FW
Sbjct: 297 FTSASVRLAFITIIYPCLILQYMGQAAFLSKNILDMPTGFYDSIPGPIFW 346
>11_06_0192 +
21128298-21128829,21129341-21129407,21131169-21131211,
21131301-21131367,21131613-21131770,21131863-21132057
Length = 353
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +1
Query: 499 IRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFW 633
+R AF+RKVY IL Q VT + RP + A W
Sbjct: 79 LRWAFVRKVYCILALQFAVTAAIAVVAWAVRPIPRFFAAGSLASW 123
>03_06_0292 -
32886148-32886354,32886997-32887154,32887265-32887378,
32887660-32887924
Length = 247
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 499 IRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVW 606
+R AFIRKVY I+ QL+VT+ P K +
Sbjct: 32 LRWAFIRKVYVIVSVQLLVTVAVAGAVNLVEPIKTF 67
>04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733
Length = 760
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -2
Query: 582 QEQSDETHRHHQLTHQDRVHLSDESPAYRFFSEIETLDFA 463
+E+ + H++++ T + R D +YRFF+E+E L A
Sbjct: 149 KEKFENVHKYYKRTKEGRAGRQD-GKSYRFFTELEALHAA 187
>08_01_1022 +
10323158-10323393,10323486-10323531,10325887-10325941,
10326027-10326107,10326189-10326400
Length = 209
Score = 29.1 bits (62), Expect = 3.1
Identities = 27/98 (27%), Positives = 43/98 (43%)
Frame = +2
Query: 215 KADRTLRAGRTRKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVEHTRRADMRPLSLASN 394
KA +L AGR ++ R VD L+L EE++ R E +A +RP + +
Sbjct: 66 KAAASLFAGR--QLSRCSGVDPDEHPIKKEFERLSLWEEKLNRFEDWDKAPLRPTTTVNT 123
Query: 395 LHMAALVTVNRAISHRTTQSAKMAKSRVSISLKNLYAG 508
AA + ++ H TT K + +S Y+G
Sbjct: 124 --QAAARFIGHSLPHLTTDQ-KRSMQAISRGEGGSYSG 158
>03_05_0306 - 22956474-22956980
Length = 168
Score = 28.7 bits (61), Expect = 4.1
Identities = 31/99 (31%), Positives = 39/99 (39%)
Frame = +3
Query: 189 KLREHVSESRRTVPSGRGVPARWTVPARWTVPTGWRLPARWSLPSRRSVSPGWSIPAGRI 368
K +EH + SRR P+ G P RW + R PT W + + S R GW G
Sbjct: 56 KAQEHGAWSRRASPASWGEP-RW-LARRPAFPT-WESSRKEASGSSRPGGMGWQKREGG- 111
Query: 369 CAPSAWLPTCIWRRWLR*TGLYPTERLSRRRWRSQGFRF 485
P W R L TG E + R S+ RF
Sbjct: 112 -DPGGWRRA---RPHLGDTGTEVGEEAAHRGGMSEAGRF 146
>12_02_0065 -
13109652-13110746,13110843-13111762,13139462-13139528,
13139607-13139675,13139877-13140020,13140100-13140171,
13140316-13140387,13140466-13140558,13140655-13140726,
13140809-13140925
Length = 906
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +3
Query: 243 VPARWTVPARWTVPTGWRLPARWSLPSRRS 332
V A PAR P+ WR P R S PSRRS
Sbjct: 6 VAAAAAAPARSRWPS-WRTPPRSSTPSRRS 34
>10_08_0888 - 21317163-21317687,21318044-21318153,21318258-21318408
Length = 261
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3
Query: 171 KLEGPTKLREHVSESRRTVPSGRGVPARW 257
+L+GP LR VSES +TV + + +PA W
Sbjct: 221 RLQGPFSLRM-VSESGQTVIAHQVIPANW 248
>08_02_0969 -
23126389-23126670,23126764-23126947,23127017-23127834,
23127953-23128642
Length = 657
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 522 GVRDPDVSADGDDGFHRSVPVPPTDQSLGGPKS 620
G DP AD +DG P PP+ G +S
Sbjct: 549 GTLDPMADADANDGSQMQTPAPPSPAGEGRRRS 581
>08_01_0445 +
3942820-3943030,3943719-3943853,3943942-3944150,
3944258-3944464
Length = 253
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +3
Query: 456 RRWRSQGFRFH*KIYTQGFHPKGVRDPDVSADGDDGFHRSVPVPPTD 596
RR +GFR F+P G D +S D DD P PPT+
Sbjct: 42 RRAAEEGFRLR-----VAFNPSGNFDLSLSTDQDDAPQVEPPPPPTE 83
>05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722
Length = 740
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 436 GYSPVHRNQRRHMQVGSQAEGAHIRP 359
G + H +QRR Q Q +G H+RP
Sbjct: 156 GRAASHESQRRRQQQQQQLKGRHLRP 181
>05_03_0122 -
8669422-8669609,8669759-8670111,8670669-8670824,
8670999-8671168,8672133-8672297,8673190-8673384,
8673506-8673634,8673759-8673980
Length = 525
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 216 RRTVPSGRGVPARWTVPARWTVPTGWRLPARWSLPS 323
R+T PS P+ + +P R GW + W LPS
Sbjct: 28 RKTPPSPPPPPSSFGLPVRAVCLGGWLVTEGWILPS 63
>06_01_1084 +
8883301-8883515,8883736-8884063,8884764-8885022,
8885581-8885681
Length = 300
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 180 GPTKLREHVSESRRTVPSGRGVPARWTVPARWTVPTGWRLPARWSLPSRRSV 335
G + +E + RT+ ARWT P T P+G +RW SR SV
Sbjct: 96 GDERKKEQMKNIMRTLKGIILAAARWTRPPSSTRPSGTSSCSRWR--SRSSV 145
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +3
Query: 504 QGFHPKGVRDPDVSADGDDGFHRSVPVPPTDQSLGGPKSLH 626
QG H G P+ G G H PP Q GG S H
Sbjct: 150 QGSHHPGGGPPEYQGRGGPGSHHPGGGPPDYQGRGGSGSHH 190
>04_01_0031 + 381389-381841
Length = 150
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +3
Query: 213 SRRTVPSGRGVPARWTVPARWTVPTGWRLPARWSLPSRRSVSPGWSIP 356
+R VP R RW P T+ W LP S P + P S P
Sbjct: 59 TRTGVPPPRTRERRWCTPRTSTLRREWALPDTASPPPPLPLEPAPSAP 106
>03_01_0201 -
1592180-1592218,1592517-1592602,1592966-1593064,
1593131-1593232,1593398-1593525,1593602-1593693,
1593798-1593869,1593964-1594032,1594116-1594199,
1594292-1594407,1594752-1594875,1594947-1595053,
1595725-1595875
Length = 422
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -1
Query: 367 IRPAGMLHPGDTLLLE---GKLHLAGNLHPVGTV 275
++P +HP D L+LE G++ LAG + P V
Sbjct: 93 VKPHNFMHPDDHLILEDESGRVTLAGAIPPAAYV 126
>02_02_0379 +
9565001-9565515,9565553-9565833,9565884-9566084,
9566253-9566309,9566955-9567019,9567199-9567420
Length = 446
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 291 WRLPARWSLPSRRSVSPGWSIPAGRICA-PSAWLP 392
+RL RW P R S++P + P + A P A +P
Sbjct: 150 YRLSPRWRSPDRLSITPTTAAPPATVLASPHAPMP 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,440,594
Number of Sequences: 37544
Number of extensions: 372467
Number of successful extensions: 1236
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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