Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30l13
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 105 5e-24
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 105 7e-24
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 105 9e-24
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 102 6e-23
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 101 1e-22
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 92 7e-20
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 85 1e-17
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 84 2e-17
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 60 3e-10
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 57 2e-09
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 57 3e-09
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 56 4e-09
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 54 2e-08
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 52 7e-08
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 52 7e-08
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 52 9e-08
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 51 2e-07
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 43 5e-05
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 41 2e-04
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 40 3e-04
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 38 0.002
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 28 1.6
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 27 2.2
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 27 2.2
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 27 3.8
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 26 5.0
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 26 6.6
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 26 6.6
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 25 8.7
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 105 bits (253), Expect = 5e-24
Identities = 63/177 (35%), Positives = 97/177 (54%), Gaps = 4/177 (2%)
Frame = +1
Query: 70 RIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKEKDYSIGIWDTAGS 249
++V LG + VGKTSL+ RF+ +F+ YQ T+G F +K M +++ + +WDTAG
Sbjct: 13 KLVFLGEQSVGKTSLITRFMYDQFDNT--YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 70
Query: 250 ERYEAMTRIYYRGAHAAIICYEPSSHESWTRLRHWLHELRTVE-DSCKVYLCGTKKDLLD 426
ER+ ++ Y R + AII Y+ ++H S+ W+ ++R D + L G K DL D
Sbjct: 71 ERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLAD 130
Query: 427 GGFVKREVAEEIVNTYSQDLN-GHFLTSSKTGENVDELFQKIVDDLAA--DVEVMKT 588
KR+V +E +++L H TS+K G NV LF+KI L +VE T
Sbjct: 131 ----KRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLPGMENVETQST 183
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 105 bits (252), Expect = 7e-24
Identities = 64/167 (38%), Positives = 94/167 (56%), Gaps = 3/167 (1%)
Frame = +1
Query: 70 RIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKEK-DYSIGIWDTAG 246
++VLLG VGK+SLVLRFV +F+ ++T+GAAF + + E + IWDTAG
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDY--RESTIGAAFLTQTLPIDENTSVKLEIWDTAG 73
Query: 247 SERYEAMTRIYYRGAHAAIICYEPSSHESWTRLRHWLHEL-RTVEDSCKVYLCGTKKDLL 423
ERY+++ +YYR A+ AI+ Y+ + S + + W+ EL R + + L G K DL
Sbjct: 74 QERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLA 133
Query: 424 DGGFVKREVAEEIVNTYSQDLNGHFL-TSSKTGENVDELFQKIVDDL 561
+R V + Y+ + N F TS+KT ENV+ELF I L
Sbjct: 134 Q---ERRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKL 177
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 105 bits (251), Expect = 9e-24
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 2/171 (1%)
Frame = +1
Query: 55 FKLVIRIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKEKDYSIGIW 234
+ + + VL+G VGK++L++RF FN E ++T+G F + + K IW
Sbjct: 7 YDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIES--KSTIGVEFATRNIVLDNKKIKAQIW 64
Query: 235 DTAGSERYEAMTRIYYRGAHAAIICYEPSSHESWTRLRHWLHELRTVEDS-CKVYLCGTK 411
DTAG ERY A+T YYRGA A+I Y+ + S+ + WL ELR DS + L G K
Sbjct: 65 DTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNK 124
Query: 412 KDLLDGGFVKREVAEEIVNTYSQDLNGHFL-TSSKTGENVDELFQKIVDDL 561
DLL R V+ E ++ + N F+ TS+ NV+E FQ ++ ++
Sbjct: 125 TDLLH----LRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEI 171
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 102 bits (244), Expect = 6e-23
Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 2/164 (1%)
Frame = +1
Query: 55 FKLVIRIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKEKDYSIGIW 234
+ + +++L+G VGK+ L+LRF + + Y +T+G F + + K + IW
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTFELEGKTVKLQIW 62
Query: 235 DTAGSERYEAMTRIYYRGAHAAIICYEPSSHESWTRLRHWLHEL-RTVEDSCKVYLCGTK 411
DTAG ER+ +T YYRGAH II Y+ + +S+ ++ WL E+ R + L G K
Sbjct: 63 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNK 122
Query: 412 KDLLDGGFVKREVAEEIVNTYSQDLNGHFL-TSSKTGENVDELF 540
D++D V+ VA+E ++ LN FL TS+K NV++ F
Sbjct: 123 SDMVDKKVVEYSVAKE----FADSLNIPFLETSAKDSTNVEQAF 162
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 101 bits (241), Expect = 1e-22
Identities = 58/180 (32%), Positives = 101/180 (56%), Gaps = 5/180 (2%)
Frame = +1
Query: 55 FKLVIRIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAK----AMRSKEKDYS 222
+ +++IVL G GK+ L+ RFV +++ ++ + TVG F ++ M +++K
Sbjct: 6 YDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSH--TVGIDFASRIISVGMGNQQKRIK 63
Query: 223 IGIWDTAGSERYEAMTRIYYRGAHAAIICYEPSSHESWTRLRHWLHELRTVEDS-CKVYL 399
+ IWDTAG E++ ++ R YYRGA A++ Y+ ++ +S+ L WL ++R + S V L
Sbjct: 64 LQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVL 123
Query: 400 CGTKKDLLDGGFVKREVAEEIVNTYSQDLNGHFLTSSKTGENVDELFQKIVDDLAADVEV 579
G+K DL + V E A E + + ++ TSS TG NV+E F +V + +E+
Sbjct: 124 AGSKSDLQNQRQVSTEEAAEFCS--EKHISSAHETSSYTGSNVEECFLSVVSTIITRIEL 181
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 92.3 bits (219), Expect = 7e-20
Identities = 53/170 (31%), Positives = 94/170 (55%), Gaps = 6/170 (3%)
Frame = +1
Query: 58 KLVIRIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKEKDYSIGIWD 237
++ +++V+LG VGKT L+ +FVN +F+ E Y+ T+GA F K + +K ++ +WD
Sbjct: 6 RVFLKVVILGDSGVGKTCLMNQFVNQKFSRE--YKATIGADFLTKDVVVDDKLVTLQLWD 63
Query: 238 TAGSERYEAMTRIYYRGAHAAIICYEPSSHESWTRLRHWLHEL--RTVEDSCKVYLCGTK 411
TAG ER++++ +YRGA +I Y ++ +S+ + +W E +T +D C +
Sbjct: 64 TAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDEC-AFPFIIV 122
Query: 412 KDLLDGGFVKREVAEEIVNTYSQDLNG----HFLTSSKTGENVDELFQKI 549
+ +D KR V+ Y + +G HF S+K NV +LF+ +
Sbjct: 123 GNQIDKDASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFETV 172
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 85.0 bits (201), Expect = 1e-17
Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 3/165 (1%)
Frame = +1
Query: 55 FKLVIRIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKEKDYSIGIW 234
+ +I+++L+G VGK+ L+LRF F + T+G F + + K + IW
Sbjct: 6 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPS--FITTIGIDFKIRTIELDGKRIKLQIW 63
Query: 235 DTAGSERYEAMTRIYYRGAHAAIICYEPSSHESWTRLRHWLH--ELRTVEDSCKVYLCGT 408
DTAG ER+ +T YYRGA ++ Y+ + +S+ +R W E E+ K+ L G
Sbjct: 64 DTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKI-LIGN 122
Query: 409 KKDLLDGGFVKREVAEEIVNTYSQDLNGHFL-TSSKTGENVDELF 540
K D D +R+V+ E + +L FL S+KT NVDE F
Sbjct: 123 KCDCED----QRQVSFEQGQALADELGVKFLEASAKTNVNVDEAF 163
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 83.8 bits (198), Expect = 2e-17
Identities = 55/187 (29%), Positives = 100/187 (53%), Gaps = 16/187 (8%)
Frame = +1
Query: 58 KLVIRIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKEKDYSIGIWD 237
K ++++++LG VGKTS++ ++VN +F+ + Y+ T+GA F K + +K ++ +WD
Sbjct: 6 KHLLKVIILGESGVGKTSIMNQYVNRKFSKD--YKATIGADFLTKEVLVDDKVVTLQLWD 63
Query: 238 TAGSERYEAMTRIYYRGAHAAIICYEPSSHESWTRLRHWLHEL-----RTVEDSCKVYLC 402
TAG ER++++ +YRGA ++ Y+ ++ +S+ L W E + ++ L
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILL 123
Query: 403 GTKKDLLDGGFVKREVAEEIVNTYSQDLN--GHFLTSSKTGENVDELFQKIV-------- 552
G K D+ + KR V++ + Q +F TS+K NV E F+ +
Sbjct: 124 GNKVDVEE---QKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAKLALENMD 180
Query: 553 -DDLAAD 570
DD+AAD
Sbjct: 181 SDDIAAD 187
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 60.5 bits (140), Expect = 3e-10
Identities = 39/157 (24%), Positives = 73/157 (46%)
Frame = +1
Query: 70 RIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKEKDYSIGIWDTAGS 249
++VL+G GKT+ V R + F E Y T+G + + +WDTAG
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEF--EKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQ 68
Query: 250 ERYEAMTRIYYRGAHAAIICYEPSSHESWTRLRHWLHELRTVEDSCKVYLCGTKKDLLDG 429
E+ + YY II ++ +S ++ + HW +L V ++ + LCG K D+ +
Sbjct: 69 EKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVCENIPIVLCGNKVDVKE- 127
Query: 430 GFVKREVAEEIVNTYSQDLNGHFLTSSKTGENVDELF 540
R+V + + + + ++ S+K+ N ++ F
Sbjct: 128 ----RKVKAKAITFHRKKNLQYYDISAKSNYNFEKPF 160
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 57.2 bits (132), Expect = 2e-09
Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Frame = +1
Query: 67 IRIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKEKDYSIGIWDTAG 246
I+ V++G VGKT L++ + +F ++ Y TV + M E Y++G++DTAG
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSD--YVPTVFDNYAVTVMIGDEP-YTLGLFDTAG 60
Query: 247 SERYEAMTRIYYRGAHAAIICYEPSSHESWTRLRH-WLHELRTVEDSCKVYLCGTKKDLL 423
E Y+ + + Y ++C+ +S S+ ++ W E+ + GT+ DL
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLIVGTQIDLR 120
Query: 424 DGGFVKREVAEE 459
D V++++A +
Sbjct: 121 DDPSVQQKLARQ 132
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 56.8 bits (131), Expect = 3e-09
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
Frame = +1
Query: 70 RIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKEKDYSIGIWDTAGS 249
++V++G GKTSL+ F F E Y TV + + R K + +WDTAG
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTE--YVPTVFENYVSDC-RVDGKSVQLALWDTAGQ 66
Query: 250 ERYEAMTRIYYRGAHAAIICYEPSSHESWTRL-RHWLHELRTVEDSCKVYLCGTKKDL-- 420
E YE + + Y AH ++ + S +S + W+ E+ T+ + L G K DL
Sbjct: 67 EEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPNVPFILVGMKADLRS 126
Query: 421 ----------LDGGFVKREVAEEIVNTYSQDLNGHFLTSSKTGENVDELFQ 543
+ FVK + AE + + SS TG+ VD++F+
Sbjct: 127 DPVAIEEMRRRNQNFVKSQQAELVAQRIG--ARKYMECSSLTGDGVDDVFE 175
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 56.4 bits (130), Expect = 4e-09
Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 7/184 (3%)
Frame = +1
Query: 61 LVIRIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKEKDYSIGIWDT 240
+ I++ ++G +GKTSL++ +V F+ E T+G F K + + + + IWD
Sbjct: 9 VTIKVGMIGDSSIGKTSLMVTYVQGSFDEEST--QTLGVNFMEKTISIRNTEITFSIWDL 66
Query: 241 AGSERYEAMTRIYYRGAHAAIICYEPSSHESWTRLRHWLHELRTVEDSCKVYLCGTKKDL 420
G + M + A A + ++ S + ++ W + R + L GTK D
Sbjct: 67 GGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNKTAVPILIGTKYDH 126
Query: 421 LDGGFVKREVAEEI---VNTYSQDLNGHFL-TSSKTGENVDELFQKI---VDDLAADVEV 579
RE EEI Y++ + + S+ NV ++F+ + V DL +
Sbjct: 127 F--MTFPREDQEEITKQARRYAKAMKASLVFCSTSHSINVQKIFKIVLAKVFDLKCTIPE 184
Query: 580 MKTV 591
+K V
Sbjct: 185 IKNV 188
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 54.4 bits (125), Expect = 2e-08
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 2/166 (1%)
Frame = +1
Query: 70 RIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKEKDYSIGIWDTAGS 249
RI +LGS VGK+SL +++V F Y T+ F +K ++ K ++++ I DTAG
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVES--YYPTIENTF-SKNIKYKGQEFATEIIDTAGQ 64
Query: 250 ERYEAMTRIYYRGAHAAIICYEPSSHESWTRLRHWLHEL--RTVEDSCKVYLCGTKKDLL 423
+ Y + + G H ++ Y +S S+ ++ ++ T + + + G K DL
Sbjct: 65 DEYSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLH 124
Query: 424 DGGFVKREVAEEIVNTYSQDLNGHFLTSSKTGENVDELFQKIVDDL 561
V E + + N + S++ ENV F+ I+ ++
Sbjct: 125 MQRAVTAEEGKALANEWKCAWTE---ASARHNENVARAFELIISEI 167
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 52.4 bits (120), Expect = 7e-08
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Frame = +1
Query: 70 RIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKEKDYSIGIWDTAGS 249
++V++G GKT L++ F F E+ Y TV + A + + + +WDTAG
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTF-PEV-YVPTVFENYVAD-VEVDGRHIELALWDTAGQ 64
Query: 250 ERYEAMTRIYYRGAHAAIICYEPSSHESWTRLRH-WLHELRTVEDSCKVYLCGTKKDL 420
E Y+ + + Y +H +IC+ + ES ++ W+ E+ + + L G K DL
Sbjct: 65 EDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDL 122
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 52.4 bits (120), Expect = 7e-08
Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 2/163 (1%)
Frame = +1
Query: 70 RIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKEKDYSIGIWDTAGS 249
++V++G VGK++L ++ + F E Y T+ ++ K E + + DTAG
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDE--YDPTIEDSYRKKCEIDGEGAL-LDVLDTAGQ 66
Query: 250 ERYEAMTRIYYRGAHAAIICYEPSSHESWTRLRHWLHELRTV--EDSCKVYLCGTKKDLL 423
E Y AM Y R ++ Y +S S+ + + ++ V +D+ V L K DL
Sbjct: 67 EEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLE 126
Query: 424 DGGFVKREVAEEIVNTYSQDLNGHFLTSSKTGENVDELFQKIV 552
V R E++ + + TS+K NV+E F +V
Sbjct: 127 AERVVSRAEGEQLAKSMH---CLYVETSAKLRLNVEEAFYSLV 166
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 52.0 bits (119), Expect = 9e-08
Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 11/169 (6%)
Frame = +1
Query: 70 RIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKEKDYSIGIWDTAGS 249
++V++G GKT L++ F F E+ Y TV + A + + + +WDTAG
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTF-PEV-YVPTVFENYVAD-VEVDGRHVELALWDTAGQ 64
Query: 250 ERYEAMTRIYYRGAHAAIICYEPSSHESWTRLRH-WLHELRTVEDSCKVYLCGTKKDLLD 426
E Y+ + + Y +H +IC+ S +S ++ W+ E+ S + L K DL +
Sbjct: 65 EDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKADLRN 124
Query: 427 GGFVKRE--------VAEEIVNTYSQDLNGH-FL-TSSKTGENVDELFQ 543
+ E V E +Q + + +L S+KT E V E+F+
Sbjct: 125 DPKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFE 173
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 50.8 bits (116), Expect = 2e-07
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Frame = +1
Query: 70 RIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKEKDYSIGIWDTAGS 249
+IV+LG GKTSL+ F F Y+ T+ + + +WDTAG
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQV--YEPTIFENYIHDIFVDGNS-IELSLWDTAGQ 71
Query: 250 ERYEAMTRIYYRGAHAAIICYEPSSHESWTR-LRHWLHELRTVEDSCKVYLCGTKKDL 420
E Y+ + + Y H +IC+ S +S + WL E+ + K+ L K DL
Sbjct: 72 EEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKLVLVALKCDL 129
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 42.7 bits (96), Expect = 5e-05
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Frame = +1
Query: 70 RIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAKAMRS-KEKDYSIGIWDTAG 246
++V++G GKT L++ F + F Y TV + K + +WDTAG
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPER--YVPTVFENYITDITYGPNSKVIELALWDTAG 73
Query: 247 SERYEAMTRIYYRGAHAAIICYEPSSHESWTRL-RHWLHELRTVEDSCKVYLCGTKKDL 420
E Y+ + + Y ++ ++C+ S + W E++ + L G K DL
Sbjct: 74 QEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRTPIVLVGLKADL 132
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 41.1 bits (92), Expect = 2e-04
Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 3/168 (1%)
Frame = +1
Query: 67 IRIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKEKDYSIGIWDTAG 246
+R++LLG ++ GKT++ + C N ++ N V F + + + IWD G
Sbjct: 17 VRVLLLGLDNAGKTTI----LKCLLNEDV---NEVSPTFGFQIRTLEVEGLRFTIWDIGG 69
Query: 247 SERYEAMTRIYYRGAHAAIICYEPSSHESWTRLRHWLHELRTVED--SCKVYLCGTKKDL 420
+ + Y+ A I + R+ L EL E + + K D
Sbjct: 70 QKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSD- 128
Query: 421 LDGGFVKREVAEEI-VNTYSQDLNGHFLTSSKTGENVDELFQKIVDDL 561
+ G E+++ + ++ Y F S+ TG N+ + + +DL
Sbjct: 129 VSGALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDL 176
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 40.3 bits (90), Expect = 3e-04
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Frame = +1
Query: 67 IRIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKEKDYSIGIWDTAG 246
+RI++LG + GKT+++ + + N + TVG F + + K+ +WD G
Sbjct: 22 MRILMLGLDAAGKTTILYKL---KLNQSVVTIPTVG--FNVETV--TYKNIKFNVWDVGG 74
Query: 247 SERYEAMTRIYYRGAHAAIICYEPSSHESWTRLRHWLHEL---RTVEDSCKVYLCGTKKD 417
++ + R Y+ G I + + + R LH + R + D C + + K+D
Sbjct: 75 QDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRD-CLLLVLANKQD 133
Query: 418 L 420
L
Sbjct: 134 L 134
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 37.9 bits (84), Expect = 0.002
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 3/161 (1%)
Frame = +1
Query: 67 IRIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKEKDYSIGIWDTAG 246
+R+V+ G + VGK+SL+ + IP V + D S+ + DT
Sbjct: 4 VRVVICGDQGVGKSSLISALIQEDNVTSIP---KVFPIISIPSNPDSNDDVSLVLVDTQS 60
Query: 247 SERYEAMTRIYYRGAHAAIICYEPSSHESWTRLR-HWLHELRTVEDSCKVYLCGTKKDLL 423
+ A+ +IC S + S+ R+ WL R++ + + LC K + L
Sbjct: 61 DSNEREYLAAEIKKAN--VICLVYSDNYSYERVSIFWLPYFRSLGVNVPIVLCENKSEDL 118
Query: 424 DGGFVKREVAEEIVNTYSQ--DLNGHFLTSSKTGENVDELF 540
D + E++ ++ ++ L S+ NV+ELF
Sbjct: 119 DNYQGLHTIEHEMIPLINEFKEIEACILCSALEKINVNELF 159
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +1
Query: 457 EIVNTYSQDLNGHFLTSSKTGENVDELFQKIVDDL 561
++ T+ ++ L SSKTG+NV+++ +I+ +
Sbjct: 199 QVQQTFDIPMSKPILVSSKTGKNVEQILPEIIQKI 233
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 400 CGTKKDLLDGGFVKREVAEEI 462
C TKKDLL+G + + EE+
Sbjct: 44 CSTKKDLLEGNNIMTRIPEEL 64
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1
Query: 388 KVYLCGTKKDLLDG 429
KVYLCG KK LDG
Sbjct: 518 KVYLCGGKKGFLDG 531
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -3
Query: 531 IDILTGFARCKEMSVQILRVSIHYL 457
+DI TGF+ CKE++ + +SI+++
Sbjct: 263 LDIDTGFSMCKEITNVAIIISINFI 287
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -3
Query: 747 INMGFYYQ*IFVPFH*FNQLNLFSVQTKSLACTHILFAFAFV 622
I+ GF+Y+ IFV F + L+++ + T+ + L + V
Sbjct: 372 ISKGFFYRVIFVGFTQMSVLSMWEIYTRDSSALAFLSMYVIV 413
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 6.6
Identities = 20/78 (25%), Positives = 32/78 (41%)
Frame = +1
Query: 67 IRIVLLGSEHVGKTSLVLRFVNCRFNAEIPYQNTVGAAFCAKAMRSKEKDYSIGIWDTAG 246
I + +LG + GK+SL+ N R + P T A + + + + DTAG
Sbjct: 240 INVAILGPSNAGKSSLINLLANRRISIVSPQSGTTRDAI---EVLVDINGFPVLLSDTAG 296
Query: 247 SERYEAMTRIYYRGAHAA 300
+ E + I G A
Sbjct: 297 LRKGEDVQEIEKIGIEIA 314
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +1
Query: 406 TKKDLLDGGFVKREVAEEIVNTYSQDLNG 492
T KDL GG +K+EVA V+TY Q NG
Sbjct: 459 TAKDLSTGGILKQEVA-AFVHTY-QYSNG 485
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 81 KHYSYY*FETMELIRIVTLCLKQTFI 4
KH+S+ ++++ I+IVTL K T I
Sbjct: 260 KHFSFVVLQSLQSIQIVTLFPKTTLI 285
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,071
Number of Sequences: 5004
Number of extensions: 53718
Number of successful extensions: 188
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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