Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30l10
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         49   7e-07
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.5  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   4.5  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    26   5.9  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   5.9  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.8  

>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = +2

Query: 605 VCGAWLGAVVIPLDWNTPWQQWPIPCYLG 691
           + GAW GA  IPLDW+ PWQ WPI   +G
Sbjct: 459 IIGAWFGAFPIPLDWDRPWQAWPITIVIG 487


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = -2

Query: 615 APHTVSMALFTSISTTVSLAKLFTPNNSCIEHSTPE*SMRGNIVSIVKSVDNINVSSCKS 436
           A  T+S  +++S S + + +   TP++S    S+   S    I S + S  + + SS  S
Sbjct: 125 AASTISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVS 184

Query: 435 NTGAPKS 415
           ++ A  S
Sbjct: 185 SSSASSS 191


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 563 DTVVEMLV--NNAMLTVCGAWLGAVVIPLDWNTPWQQWPIPCYL 688
           DT VE+    +N  LT+ G     + +  +W  P ++W + C L
Sbjct: 134 DTSVEVAAADSNDYLTITGRSGRTLKLSKEWKNPSKKWKVGCKL 177


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 199 YNSHNTRQVNTCNKA*Y 149
           Y+SH+ +QVN CN + Y
Sbjct: 226 YHSHSVKQVNFCNDSPY 242


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +2

Query: 92   YRYTKMFAFNTQLELRRITISSLITCIYLPSIVTVISYRGSLYY 223
            + Y+KM     +   R ++I SL  C+   ++ +  +  GS++Y
Sbjct: 1513 HEYSKMLNLGIEASWRSLSIDSLKKCLSKSNLESFEAKLGSIFY 1556


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 125  QLELRRITISSLITCIYLPSIVTVISYRGS 214
            Q  L R   + LIT   +PS+V  +SYRG+
Sbjct: 2458 QSMLDRAGSNMLITYFKIPSVVLRLSYRGT 2487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,768
Number of Sequences: 5004
Number of extensions: 57939
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)