Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30l10
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0205 + 1621760-1621784,1622079-1622208,1622569-1622635,162...    51   1e-06
10_02_0202 - 6770448-6770561,6771185-6771279,6771638-6771686,677...    48   7e-06
04_04_1333 - 32721968-32721973,32722101-32722706,32722822-32722941     34   0.12 
06_01_0280 - 2056449-2056487,2056613-2056930,2057025-2057171,205...    31   0.65 
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874...    29   4.6  
10_05_0032 - 8361039-8361314                                           28   8.0  

>03_01_0205 +
           1621760-1621784,1622079-1622208,1622569-1622635,
           1622806-1622909,1623099-1623147,1623190-1623290,
           1623623-1623740,1624342-1624455
          Length = 235

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 24/60 (40%), Positives = 30/60 (50%)
 Frame = +2

Query: 512 GVECSMQLLFGVKSFARDTVVEMLVNNAMLTVCGAWLGAVVIPLDWNTPWQQWPIPCYLG 691
           G +C           + D+V  M+   A   V GAWLGA  +PLDW  PWQ+WPI    G
Sbjct: 148 GTKCECHFWSSNYCGSTDSVDYMISAPAHGAVIGAWLGAWPMPLDWERPWQEWPISVTYG 207


>10_02_0202 -
           6770448-6770561,6771185-6771279,6771638-6771686,
           6771795-6771843,6772035-6772228
          Length = 166

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 18/29 (62%), Positives = 20/29 (68%)
 Frame = +2

Query: 605 VCGAWLGAVVIPLDWNTPWQQWPIPCYLG 691
           V GAWLGA  +PLDW  PWQ+WPI    G
Sbjct: 110 VIGAWLGAWPMPLDWERPWQEWPISVTYG 138


>04_04_1333 - 32721968-32721973,32722101-32722706,32722822-32722941
          Length = 243

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = -2

Query: 636 ITTAPSHAPHTVSMALFTSISTTVSLAKLFTPNNSCIEHSTPE*SMRGNIVSIVKSVDN- 460
           + TAPS  P TV+MAL ++ S  + L  + +  +  +       +   + VS +  +D  
Sbjct: 25  MATAPSRLPATVAMALISTPSAAIRLTPINSVTHFDVLRLRARRTDGEDDVSALPEIDGA 84

Query: 459 INVSSCKSNTGAPKSIIP 406
            +   C ++T +P+S +P
Sbjct: 85  ASALPCTASTASPRSCVP 102


>06_01_0280 -
           2056449-2056487,2056613-2056930,2057025-2057171,
           2057273-2058112,2059044-2059117,2059515-2059647,
           2059804-2059941
          Length = 562

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 21/79 (26%), Positives = 36/79 (45%)
 Frame = -2

Query: 654 VFQSRGITTAPSHAPHTVSMALFTSISTTVSLAKLFTPNNSCIEHSTPE*SMRGNIVSIV 475
           VF    +    + AP+ VSM  F    T + L +     + C+  S      R  + SI+
Sbjct: 324 VFGCDKLKLIENEAPN-VSMFAFQGDKTELKLGETLQIKSLCMVRSGYVYHARAELPSIM 382

Query: 474 KSVDNINVSSCKSNTGAPK 418
            +++++ + SCK    APK
Sbjct: 383 PNLESLALKSCKETAFAPK 401


>04_04_0585 - 26386248-26386271,26386510-26386699,26387363-26387463,
            26387554-26387685,26387759-26387857,26387956-26388127,
            26388217-26388512,26388601-26388726,26388848-26389062,
            26389154-26389225,26389299-26389368,26389441-26389517,
            26389605-26389923,26390034-26390225,26390321-26390551,
            26390585-26390950,26392251-26392313,26392394-26392456,
            26392544-26392642,26393497-26393523,26394299-26394358,
            26395230-26396147,26396243-26397268
          Length = 1645

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 253  QNIKRRSFAHIVERPSIRYNSHNT 182
            QN+K+R F  ++  P + Y  H+T
Sbjct: 1297 QNVKKRRFDDVINSPDVEYFGHST 1320


>10_05_0032 - 8361039-8361314
          Length = 91

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 647 SPGVSLQPPAMRRIRLAWHYSLASRPLC 564
           S  V   P  + R+ LAWH+ LAS   C
Sbjct: 9   STAVGADPLPLPRLALAWHHPLASASPC 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,678,234
Number of Sequences: 37544
Number of extensions: 343931
Number of successful extensions: 738
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)