Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30l09
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0405 + 22637025-22637130,22637246-22637403,22637934-226380...    29   3.3  
07_03_0576 + 19638725-19638779,19638988-19639144,19639871-196401...    29   4.4  
05_05_0051 + 21923402-21923763,21923861-21923951,21924048-219241...    29   4.4  
01_01_0148 - 1337494-1338057                                           28   5.9  

>02_04_0405 +
           22637025-22637130,22637246-22637403,22637934-22638099,
           22638200-22638517,22638906-22639117
          Length = 319

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 172 LRAGVISPMSILGTPIVSSAGTKSHQGDNQEHDKVLF 62
           L+A VIS MSIL  P+ +SA  ++ Q  N   +  +F
Sbjct: 96  LKAAVISTMSILAVPLEASASAETCQPANSMANMPIF 132


>07_03_0576 +
           19638725-19638779,19638988-19639144,19639871-19640113,
           19640267-19640801,19640897-19641054,19641194-19641626
          Length = 526

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 553 YENRWSRFRDSDYISTYILIYKNFSFKDN 639
           Y+NRW +  + +Y+    L +KN+   DN
Sbjct: 225 YQNRWFQITEGNYLLEASLKHKNYGVDDN 253


>05_05_0051 +
           21923402-21923763,21923861-21923951,21924048-21924196,
           21924279-21924522,21924664-21924768,21924842-21925024,
           21925118-21925319,21925896-21926372,21926680-21926771,
           21927265-21927444
          Length = 694

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 104 LGSSTADDGCPENAHWTDDPCAKTCDDP 187
           +G +TA +      HWT  PC   C DP
Sbjct: 129 IGEATALEVRATGIHWTFAPCVAVCRDP 156


>01_01_0148 - 1337494-1338057
          Length = 187

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
 Frame = +2

Query: 137 ENAHWTDDP---CAKTCDDPY---LTNTVCIAALIPTCHCN 241
           ++  W DDP   CA + + P+       VC  +L P CHC+
Sbjct: 102 DDVFWGDDPGTSCAPSSEWPWGPCCDIAVCTKSLPPICHCS 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,404,499
Number of Sequences: 37544
Number of extensions: 288416
Number of successful extensions: 741
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)