Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30l09
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    36   3e-04
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    36   3e-04
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   3.5  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   4.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   4.6  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    22   6.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.0  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 131 CPENAHWT--DDPCAKTCDDPYLTNTVCIAALIPTCHCNSGLVFNAERKCVPISDC 292
           CP N  ++  D  C + C +  +   +CI    P C C  G + N ++ CVP S C
Sbjct: 37  CPSNEIFSRCDGRCQRFCPN-VVPKPLCIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 131 CPENAHWT--DDPCAKTCDDPYLTNTVCIAALIPTCHCNSGLVFNAERKCVPISDC 292
           CP N  ++  D  C + C +  +   +CI    P C C  G + N ++ CVP S C
Sbjct: 37  CPSNEIFSRCDGRCQRFCPN-VVPKPLCIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 237 QWQVGMRAAMQTVLVKYGSSQV 172
           +WQ   RAA+ T+L   G   V
Sbjct: 250 RWQYAARAAISTMLASMGGGLV 271


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 514 SNYRPRNPLYTKFYENRWSRFRDSDYISTYILIYKNF 624
           +NY+  N  Y   Y N ++   +++Y + Y  +YKN+
Sbjct: 87  NNYKYSN--YNN-YNNNYNNNYNNNYNNNYKKLYKNY 120


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 514 SNYRPRNPLYTKFYENRWSRFRDSDYISTYILIYKNF 624
           +NY+  N  Y   Y N ++   +++Y + Y  +YKN+
Sbjct: 87  NNYKYSN--YNN-YNNNYNNNYNNNYNNNYKKLYKNY 120


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 511 RSNYRPRNPLYTKFYENRWSRFRDSDYIS 597
           + N +PR P  T+   +   +FR+  Y++
Sbjct: 7   KPNRKPRTPFTTQQLLSLEKKFREKQYLT 35


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 526 PRNPLYTKFYENRWSRFRDSDYISTY 603
           PR+ L  K Y+    R RD+   ST+
Sbjct: 620 PRSTLRNKVYKLAMERERDASLSSTH 645


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,996
Number of Sequences: 438
Number of extensions: 3362
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)