Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30l07
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 27 2.0
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 27 2.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 4.7
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 26 4.7
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 26 6.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.2
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 26 6.2
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 25 8.2
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 25 8.2
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 25 8.2
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -3
Query: 310 PFALYPQLPWDPTVTSEARFLGSAAGFRPVGAGAGGS 200
P YPQ P P V ++ ++ F+ +G+G G +
Sbjct: 242 PVQAYPQAPQQPIVVAQPTEHKHSSTFKKIGSGLGSA 278
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 198 PEPPAPAPTGRKPAADPKKRASDVTVGSHGSCGYRAKG 311
P+ PAP G+ PA PK+ D+ V +H S Y A G
Sbjct: 1191 PQEPAPTIAGQVPATWPKE--GDI-VFNHVSVSYSAAG 1225
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 204 PPAPAPTGRKPAADPKKRASDVTVGSHG 287
PP PAP+G P P A V S G
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSG 1177
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 204 PPAPAPTGRKPAADPKKRASDVTVGS 281
PP PAP+G P P A V V S
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPS 1137
>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 266
Score = 26.2 bits (55), Expect = 4.7
Identities = 7/21 (33%), Positives = 17/21 (80%)
Frame = +1
Query: 31 LCVIVCCQQRLPYSDMEDRVI 93
LC+ + C+QR +++ME++++
Sbjct: 53 LCLTIMCEQRRSWTEMEEKLL 73
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/54 (24%), Positives = 22/54 (40%)
Frame = +2
Query: 92 SCQCCC*NRLAFIREDDYGELFARSISTQGFAKFASRTASPSAHGPKTRRRPQE 253
S Q CC +++ED Y E R ++ K A + G + ++ E
Sbjct: 300 SGQVCCAGSRVYVQEDVYDEFIKRMVAKAKTLKVGDPFAEDTFQGAQVSKQQYE 353
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 577 LSSVQASIDSLLATIRTRLHIPPKPVPHTV 488
+SS S S L+ H+PP +PHTV
Sbjct: 1 MSSSSPSSQSRLSVPGRTPHLPPLTIPHTV 30
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 6.2
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = +3
Query: 156 SRGRSPPK-ASLNSRPEPPAPAPT--GRK-PAADPKKRAS 263
S GR PP +S + PPAP P GR PA P AS
Sbjct: 371 STGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNAS 410
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +1
Query: 247 PRNELQTSPSGPTVVVDTERKVHPTRSIIRIRATGRRRNLAD 372
P + T P P + +T +HP+ S +R R + +D
Sbjct: 297 PNSNYYTGPPTPVSISNTPENIHPSSSEVR-RIASHSKQFSD 337
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -3
Query: 535 IRTRLHIPPKPVPHTV-GLPAFNDSY 461
+RT LH P+PH V G+P D Y
Sbjct: 133 VRTILHPFSTPIPHMVHGIPWLQDLY 158
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 188 KFASRTASPSAHGPKTRRRPQETSFRRHRR 277
K RT S HG R P T RH R
Sbjct: 138 KEKERTRSNHRHGSHRRHEPYRTHLSRHHR 167
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 192 SRPEPPAPAPTGRKPA-ADPKKRASDVT 272
S EPPAP+ ++P+ + P+K+ S T
Sbjct: 331 SSNEPPAPSAENKQPSVSSPEKKESPAT 358
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,960
Number of Sequences: 5004
Number of extensions: 58489
Number of successful extensions: 254
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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