Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30l07
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.95 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.8  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   5.1  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   5.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +3

Query: 165 RSPPKASLNSRPEPPAPAPTGRKPAADPKKRASDVTV 275
           +SP      S P P    P G  P A P +  S + +
Sbjct: 29  QSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMI 65



 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +3

Query: 168 SPPKASLNSRPEPPAPAPTGRKPAADPKKRASDVTVGSH 284
           SPP  S      PP   P G  P+ +P +       G H
Sbjct: 38  SPPNPSQG----PPPGGPPGAPPSQNPSQMMISPASGIH 72


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 316 GEPFALYPQLPWDPTVTSEARFLGSAAGF 230
           G P  +  Q+PWD  V + A++     GF
Sbjct: 328 GNPICV--QIPWDKNVEALAKWANGQTGF 354


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 113 NRLAFIREDDYGELFARSISTQGFAKFASRTAS 211
           N++AF    DY     RS++TQ F +F   T S
Sbjct: 26  NKVAFDIPPDYLPDRYRSVATQVFNRFGDDTES 58


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 229  ENPPPTPRNELQTSPS 276
            E PPP PRN  Q + S
Sbjct: 1858 EPPPPPPRNHDQNNSS 1873


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 668 GHGNAFFNEIFSRC 627
           G G    NEIFSRC
Sbjct: 33  GRGKCPSNEIFSRC 46


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 668 GHGNAFFNEIFSRC 627
           G G    NEIFSRC
Sbjct: 33  GRGKCPSNEIFSRC 46


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 193  RVPNRQPQRPRAENPPPTPRNELQTSPS 276
            R P+    RP  E P   P  +L  SPS
Sbjct: 1355 RGPSASGGRPVPERPERVPTVDLSPSPS 1382



 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 199  PNRQPQRPRAENPPPTPRNELQ 264
            P +Q Q+P+ + P P  + + Q
Sbjct: 1517 PQQQSQQPQQQQPQPQQQQQQQ 1538


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 4   YYLFVNYFKLCVIV 45
           YYLF  Y   C+IV
Sbjct: 246 YYLFHTYIPTCLIV 259


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 598  RVLWERYLSSVQASIDSLLATIRTRLHIPPKPVPHTVG 485
            R L E   SS+ +   +L  T   +   PP P P + G
Sbjct: 1328 RPLSEHIYSSIDSDYSTLERTAWRQQQPPPPPPPPSSG 1365


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +1

Query: 223 RAENPPPTPRNELQTSPSGPTVVVDTERKVHPTRS 327
           +   PP  PR     SPS   +   TE+   P  S
Sbjct: 561 KTPQPPQCPRFRKLDSPSDSGIESGTEKPDKPASS 595


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,718
Number of Sequences: 438
Number of extensions: 4667
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)