Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30l06
         (291 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    89   1e-19
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   3.0  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    25   3.0  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    24   5.2  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    23   6.9  
SPAC1786.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   6.9  
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    23   9.1  
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces...    23   9.1  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    23   9.1  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 89.0 bits (211), Expect = 1e-19
 Identities = 38/76 (50%), Positives = 51/76 (67%)
 Frame = +2

Query: 5   RLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXXLTP 184
           RL+PAPRG G+V+APV K+ LQ+AG++DCYT +RGST TLGNF              LTP
Sbjct: 167 RLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNFVKAAFAAASLTYGILTP 226

Query: 185 DLWRDIPLTKSPYSEF 232
           +LW + P  ++P  E+
Sbjct: 227 NLWAERPFGQTPIEEY 242


>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 156 LPRHMPTSLLTCGG 197
           LPR +PTSLLT  G
Sbjct: 27  LPRSIPTSLLTAAG 40


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 76  WCTGLLHVSSWFNWHLGKFC*SHIRCHCQD 165
           WC     +SSWFN  L K    +++  CQ+
Sbjct: 59  WCM----LSSWFNSKLSKLSAGYLQFDCQN 84


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -2

Query: 230 TLSMET*SAGYPSTSQE*GRHMSWQWQRMWL*QNFPRCQLNHELTCSNPVHQP 72
           TLS  + S G P   +  GRH S  +   W+ Q F   + +     S   H P
Sbjct: 461 TLSFTSGSEGIPKGVK--GRHFSLAYYFDWMAQEFNLSESDRFTMLSGIAHDP 511


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 58  EASSDGWCTGLLHVSSWFNWHLGKFC*SHIRCH 156
           E  S  W + +   S W N +L +F   H+R H
Sbjct: 35  ERVSRSWNSIVRRSSVWHNLYLSEFGTKHLRRH 67


>SPAC1786.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 111

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 114 LAPWEILLKPHTLPLPRHMPTS 179
           L PW I  K H +  PR +P++
Sbjct: 74  LVPWLIRQKWHKIDEPRQLPST 95


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +3

Query: 75  LVYRIATRQLVVQLAPWEILLKPHTLPLPRHMPTSL 182
           L+Y +   + +V +  W I+    +L +P+  P  L
Sbjct: 22  LLYIVCPLETIVSILYWSIVSYDRSLLIPKDRPVPL 57


>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 223 VWRLSQRDIPPQVRSEVGIC 164
           VW + +  + P+VRS+V  C
Sbjct: 215 VWSIGKYFLDPEVRSKVTFC 234


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 16  CPSWYWY 36
           CPSW WY
Sbjct: 632 CPSWTWY 638


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,222,900
Number of Sequences: 5004
Number of extensions: 22035
Number of successful extensions: 63
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)