Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30l06
         (291 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                       93   3e-20
07_01_0756 + 5819367-5820038,5820847-5821005                           89   4e-19
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     53   3e-08
09_02_0200 + 5717867-5717872,5718049-5718351                           26   4.4  
12_01_0216 + 1644769-1644926,1645705-1645837,1645966-1646182,164...    26   5.8  
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047...    25   7.7  
06_03_1310 + 29238644-29240260                                         25   7.7  
01_02_0091 - 11023912-11024017,11024112-11024185,11024478-110248...    25   7.7  

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score = 93.1 bits (221), Expect = 3e-20
 Identities = 41/76 (53%), Positives = 52/76 (68%)
 Frame = +2

Query: 5   RLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXXLTP 184
           R++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST TLGNF              LTP
Sbjct: 177 RMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTP 236

Query: 185 DLWRDIPLTKSPYSEF 232
           D WRD    KSP+ E+
Sbjct: 237 DFWRDTKFVKSPFQEY 252


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score = 89.4 bits (212), Expect = 4e-19
 Identities = 39/76 (51%), Positives = 52/76 (68%)
 Frame = +2

Query: 5   RLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXXLTP 184
           R++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST TLGNF              LTP
Sbjct: 180 RMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTP 239

Query: 185 DLWRDIPLTKSPYSEF 232
           D WR+    K+P+ E+
Sbjct: 240 DFWRETRFIKTPFQEY 255


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 22/43 (51%), Positives = 33/43 (76%)
 Frame = +2

Query: 5   RLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 133
           R++  P G+ +V+  VPKK+L+ AG++D +TS+RGST TL NF
Sbjct: 65  RMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSNF 107


>09_02_0200 + 5717867-5717872,5718049-5718351
          Length = 102

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 141 PHTLPLPRHMPTSLLTCGGI 200
           PHT PLP  +PTS  + GG+
Sbjct: 74  PHT-PLPSSLPTSAASWGGV 92


>12_01_0216 +
          1644769-1644926,1645705-1645837,1645966-1646182,
          1646241-1646310,1646311-1646482,1646559-1646753
          Length = 314

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 19 PSWYWYCVCASS*EAS 66
          PSWYWY + ++   AS
Sbjct: 17 PSWYWYAISSNGVAAS 32


>12_02_0228 +
           15903452-15903812,15904153-15904202,15904615-15904713,
           15907146-15907415,15908045-15908125,15909033-15909599,
           15909677-15910053,15910326-15911613
          Length = 1030

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 138 KPHTLPLPRHMPTSLLTCGGISR 206
           KP TLPL  H P++L+    I R
Sbjct: 521 KPPTLPLRSHAPSNLVLSSEIDR 543


>06_03_1310 + 29238644-29240260
          Length = 538

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 135 LKPHTLPLPRHMP 173
           L PH  PLP HMP
Sbjct: 378 LAPHRSPLPHHMP 390


>01_02_0091 - 11023912-11024017,11024112-11024185,11024478-11024834,
            11024938-11025166,11025468-11025559,11026099-11026326,
            11027108-11027356,11027429-11027471,11027589-11027836,
            11027922-11028035,11028122-11028322,11028417-11028593,
            11028725-11028853,11029210-11029287,11029369-11029464,
            11029563-11029634,11031549-11031677,11032105-11032220,
            11033048-11033204,11033343-11033426,11033513-11033574,
            11034901-11035067,11035162-11035226,11035315-11035371,
            11035547-11035633,11036638-11036703,11036810-11036908
          Length = 1193

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 8    LIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 130
            L PAP    IV   V   ++ M  ++D Y SA G T TLG+
Sbjct: 1136 LTPAPVFPLIVGVSVIALVISMPRLKDLYQSAVGMT-TLGS 1175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,235,590
Number of Sequences: 37544
Number of extensions: 162840
Number of successful extensions: 368
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)