Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt30l06
(291 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 104 9e-24
Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical pr... 29 0.56
Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical pr... 29 0.56
Z81545-4|CAB04439.1| 352|Caenorhabditis elegans Hypothetical pr... 26 3.9
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 25 6.8
Z92807-5|CAB07265.1| 480|Caenorhabditis elegans Hypothetical pr... 25 9.1
Z74031-10|CAA98450.1| 399|Caenorhabditis elegans Hypothetical p... 25 9.1
Z73973-5|CAA98267.2| 882|Caenorhabditis elegans Hypothetical pr... 25 9.1
AL021482-5|CAA16342.1| 480|Caenorhabditis elegans Hypothetical ... 25 9.1
AF047659-7|AAY86256.1| 302|Caenorhabditis elegans Hypothetical ... 25 9.1
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 104 bits (250), Expect = 9e-24
Identities = 48/73 (65%), Positives = 54/73 (73%)
Frame = +2
Query: 5 RLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXXLTP 184
RLIPAPRGTGIVSAPVPKKLL MAG++DCYT+A+GST TLGNF LTP
Sbjct: 190 RLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAKATYAALQRTYSYLTP 249
Query: 185 DLWRDIPLTKSPY 223
DLW++ L KSPY
Sbjct: 250 DLWKEEALEKSPY 262
>Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.1 bits (62), Expect = 0.56
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 20 PRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 115
PRG G+ P K+ + G++D Y GST
Sbjct: 227 PRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.1 bits (62), Expect = 0.56
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 20 PRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 115
PRG G+ P K+ + G++D Y GST
Sbjct: 227 PRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>Z81545-4|CAB04439.1| 352|Caenorhabditis elegans Hypothetical
protein F49H6.4 protein.
Length = 352
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 214 LSQRDIPPQVRSEVGICLGNGSVCGF 137
LS IP ++ VG+ +GNG+VC +
Sbjct: 99 LSWFGIPFTIQLFVGLIIGNGAVCSY 124
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 90 ATRQLVVQLAPWEILLKPHTLPLPRHMPTSLLTCGGISR*LSLHTQSSKSKT 245
+T + V +L WE LK T+P R + T G SR +S +S++
Sbjct: 215 STSECVKRLFLWENRLKIATIPGARDISTDSSDAGSSSRRRRARRRSHRSRS 266
>Z92807-5|CAB07265.1| 480|Caenorhabditis elegans Hypothetical
protein K11D9.3 protein.
Length = 480
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 45 RQFLRSFFRWLVYRIATRQLVVQLAPWEI 131
R LR+FF W V R+ + + L W +
Sbjct: 169 RMALRAFFNWGVARLMMTLIAMALPEWRM 197
>Z74031-10|CAA98450.1| 399|Caenorhabditis elegans Hypothetical
protein F32D8.10 protein.
Length = 399
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -3
Query: 289 FFLRQILLFSCYTMTVLDFEL*VWRLSQRDIPPQVRSEVGICLGNGSVCGFSK 131
F++ + + S T+ L ++ Q P +R E+G CLG+ C FS+
Sbjct: 315 FYVLSVDVISLLTIVASSARLPIYAYFQ----PLLRKEMGQCLGDWWCCCFSE 363
>Z73973-5|CAA98267.2| 882|Caenorhabditis elegans Hypothetical
protein F25D1.4 protein.
Length = 882
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -2
Query: 149 RMWL*QNFPRCQLNHELTC 93
+ W +N PRC L E+ C
Sbjct: 348 KKWKKRNIPRCTLRQEIEC 366
>AL021482-5|CAA16342.1| 480|Caenorhabditis elegans Hypothetical
protein K11D9.3 protein.
Length = 480
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 45 RQFLRSFFRWLVYRIATRQLVVQLAPWEI 131
R LR+FF W V R+ + + L W +
Sbjct: 169 RMALRAFFNWGVARLMMTLIAMALPEWRM 197
>AF047659-7|AAY86256.1| 302|Caenorhabditis elegans Hypothetical
protein K07H8.11 protein.
Length = 302
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 284 FKTNSFIQLLYNDCLRL*T 228
F+ NS+ LLYN+ LRL T
Sbjct: 137 FRFNSYDSLLYNELLRLST 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,831,022
Number of Sequences: 27780
Number of extensions: 129025
Number of successful extensions: 353
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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