Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30k19
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1558 - 34417801-34417920,34418930-34419051,34419458-344195...    33   0.25 
01_07_0354 - 42969824-42969991,42970081-42970217,42970310-429704...    30   1.8  
01_06_1539 + 38107108-38109649,38110563-38110915                       29   5.4  
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631...    28   9.4  
06_03_0887 + 25688726-25689616,25689759-25690406                       28   9.4  

>04_04_1558 -
           34417801-34417920,34418930-34419051,34419458-34419531,
           34419736-34419819,34419945-34420080,34420806-34420836,
           34421228-34421386,34422375-34422595,34422685-34422898
          Length = 386

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +3

Query: 225 TLRSGLLRVSQLLTMTSPTPALTSRKAVSATPLSPSE*KAKDIILSTSRLK 377
           T+   L+R S+ L  TSP PA  +   +S++ LSP + +  D  L+ +R +
Sbjct: 12  TIADYLIRPSKRLRPTSPAPAAAASAPLSSSSLSPEQRRRADTNLALARAR 62


>01_07_0354 -
           42969824-42969991,42970081-42970217,42970310-42970449,
           42970703-42970806,42970924-42971040,42971137-42971223,
           42971309-42971410,42971643-42971740,42971835-42971910,
           42971992-42972156
          Length = 397

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 239 IIKGVAAIDNDFSHASANITEGGVGYSFVTVRMKSQRHHPLNFEVEI 379
           I++ V AI+  F H   N+   G+G   + ++   + H  LN E++I
Sbjct: 173 IVEQVLAIEETFQHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKELKI 219


>01_06_1539 + 38107108-38109649,38110563-38110915
          Length = 964

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -2

Query: 493 NITHGNCCRFKTNYKNFFYHYTFIVTVEIISCKL*LEVNFNLEVERMMSLAFHSDGD 323
           N T+   C +  N++NF     F+V + + S  + L     L  E      FHS GD
Sbjct: 594 NATNLRYCPWNDNHQNFSQRRLFVVLIIVTSLVVLLSGLACLRYENYKLEQFHSKGD 650


>12_02_0522 -
           19960092-19960595,19962737-19962880,19963042-19963131,
           19963215-19963320,19963400-19963574,19963849-19963951,
           19964382-19964636,19964726-19964803,19964908-19965000,
           19965091-19965222,19965898-19966002,19966127-19966201,
           19966284-19966340,19966419-19966532,19966613-19966756,
           19966886-19966969,19967071-19967164,19967244-19967369,
           19967507-19967580,19967672-19967875,19968234-19968388,
           19968860-19968947,19969505-19969730,19970235-19970286,
           19970766-19970958,19973221-19973314,19973744-19973788,
           19974874-19974896
          Length = 1210

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +2

Query: 119 DMIVGDTVHRKMVFHQRVKDFAIPFKKRIKTLSYTDPEKRIIKGVAAID----NDFSHAS 286
           D+IV      K VF + +   A     +++ LS TDP+  +IK  A +D     D  +  
Sbjct: 366 DLIVHSLYSNKEVFLRELVSNASDALDKLRYLSVTDPD--LIKDGAGLDIRIQTDKENGI 423

Query: 287 ANITEGGVG 313
             IT+ G+G
Sbjct: 424 ITITDTGIG 432


>06_03_0887 + 25688726-25689616,25689759-25690406
          Length = 512

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 373 NLEVERMMSLAFHSDGD-KGVADTAFRDVSAGVGEVIVNSCDTLNNPLLRVGV 218
           N+E+  + SL FH D +  GVAD    D++   G       + L  P+LRV V
Sbjct: 458 NVELP-LASLLFHIDWEASGVADPTEFDMTEAFGITARRKANLLLRPILRVPV 509


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,995,127
Number of Sequences: 37544
Number of extensions: 341414
Number of successful extensions: 811
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)