Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30k19
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003141-12|AAP68910.1|  946|Caenorhabditis elegans Hypothetical...    33   0.22 
AF003141-11|AAP68909.1| 1437|Caenorhabditis elegans Hypothetical...    33   0.22 
AL132948-39|CAI79178.1|  380|Caenorhabditis elegans Hypothetical...    29   2.8  
AL132948-38|CAD31811.1|  378|Caenorhabditis elegans Hypothetical...    29   2.8  

>AF003141-12|AAP68910.1|  946|Caenorhabditis elegans Hypothetical
           protein W02D3.10b protein.
          Length = 946

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 131 GDTVHRKMVFHQRVKDFAIPFKKRIKTLSYTDPEKRIIKGVAAIDN 268
           G   + KM F+QR KDF   F K+++ +   + +  ++ G  A DN
Sbjct: 176 GKNNNSKMSFNQRWKDFVAVFIKKVRDIDQIELDDELLPGSDAADN 221


>AF003141-11|AAP68909.1| 1437|Caenorhabditis elegans Hypothetical
           protein W02D3.10a protein.
          Length = 1437

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 131 GDTVHRKMVFHQRVKDFAIPFKKRIKTLSYTDPEKRIIKGVAAIDN 268
           G   + KM F+QR KDF   F K+++ +   + +  ++ G  A DN
Sbjct: 176 GKNNNSKMSFNQRWKDFVAVFIKKVRDIDQIELDDELLPGSDAADN 221


>AL132948-39|CAI79178.1|  380|Caenorhabditis elegans Hypothetical
           protein Y39B6A.12b protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 225 TLRSGLLRVSQLLTMTSPTPALTSRKAVSATPLSPSE*KAKDIILSTSRLKFTSSQSLQE 404
           T  S      Q+  MTS   A  +  A +ATP+ P++  A+ + +     K   +QSL  
Sbjct: 279 TATSSSAAAPQIPAMTSSAVASATSAAAAATPMMPAKYNAQAVQILDFEAKVLYNQSLHS 338

Query: 405 MIS 413
            I+
Sbjct: 339 TIA 341


>AL132948-38|CAD31811.1|  378|Caenorhabditis elegans Hypothetical
           protein Y39B6A.12a protein.
          Length = 378

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +3

Query: 225 TLRSGLLRVSQLLTMTSPTPALTSRKAVSATPLSPSE*KAKDIILSTSRLKFTSSQSLQE 404
           T  S      Q+  MTS   A  +  A +ATP+ P++  A+ + +     K   +QSL  
Sbjct: 277 TATSSSAAAPQIPAMTSSAVASATSAAAAATPMMPAKYNAQAVQILDFEAKVLYNQSLHS 336

Query: 405 MIS 413
            I+
Sbjct: 337 TIA 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,487,977
Number of Sequences: 27780
Number of extensions: 335786
Number of successful extensions: 803
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)