Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30k19
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.1  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   5.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 270 TSPTPALTSRKAVSATPLSPSE*KAKDIILSTS 368
           T+ T A TS     + P SP++    D+  STS
Sbjct: 226 TTATMATTSTPGSGSLPASPADSGVSDVESSTS 258


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = -1

Query: 128 RSCRMRRKNTPQ---TQTIGAIILNAFRFHITKYSVYSGRRTT 9
           R C    KN  +    Q     +++  +FHIT+Y + +    T
Sbjct: 99  RQCVDNAKNEDKCLTAQKFSRCVIDYVKFHITQYMISNANSNT 141


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 155 PSSGAPCLQRSCRMRRKNTPQTQTIGAI 72
           P    P  + S R RR+ TP+  ++  I
Sbjct: 396 PRQTPPSRKESGRRRRRRTPRYNSVSKI 423


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 480 EIVAGSKLITRISFIITH 427
           + + G K+  RISFI+ H
Sbjct: 350 QAITGLKVKRRISFILVH 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,269
Number of Sequences: 438
Number of extensions: 4035
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)