Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30k16
         (224 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   1.8  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    23   4.1  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    23   5.4  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    23   5.4  
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    23   5.4  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    23   7.2  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    23   7.2  
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces...    22   9.5  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    22   9.5  

>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +2

Query: 41  NKNGLESDYCFMHHASSSFGCPSTCHRWCRRLGRLEQWXSQPLDTSM 181
           N+  L   +CF H+  +S+G  ++  R+       + W   P+D S+
Sbjct: 195 NREALICSHCFHHNGLASYGEKASDVRYVCLF--CKAWNGPPIDKSL 239


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 32  HFINKNGLESDYCFMHHASSSFGCPSTCHRW 124
           H+I K+G  S+    H+ S      + CHR+
Sbjct: 92  HYIRKHGPLSEREAAHYLSQILDAVAHCHRF 122


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 38  INKNGLESDYCFMHHASSS 94
           +N+NGL  +  F+HH   S
Sbjct: 561 LNQNGLRMESSFIHHEHPS 579


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 59  SDYCFMHHASSSFGCPSTC 115
           +DYC   H   +F C  TC
Sbjct: 263 NDYCSACHGPGNFLCCETC 281


>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 89  SSFGCPSTCHRWCRRL 136
           ++FG  S C RWC RL
Sbjct: 274 AAFGA-SACTRWCSRL 288


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 56  ESDYCFMHHASSSF 97
           ESD C+  +ASSSF
Sbjct: 128 ESDSCYFGNASSSF 141


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 121  VVPAVGEAGTMAQSTLGYLHGSXPLPGTRSG 213
            VVP  G   +   S   +   + P  GTRSG
Sbjct: 1081 VVPTAGTVTSTTGSGTSWFTTTVPATGTRSG 1111


>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 116 GRLRDSRSYC 87
           G LRDSR YC
Sbjct: 242 GELRDSRHYC 251


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 50  GLESDYCFMHHASSSFGCPST 112
           GLE +   ++H+S S G P +
Sbjct: 157 GLEPEVALINHSSGSTGVPKS 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 781,119
Number of Sequences: 5004
Number of extensions: 11349
Number of successful extensions: 32
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)