Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30k16
         (224 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0350 + 16899076-16900164                                         28   1.2  
05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802     27   1.5  
04_04_0069 + 22506885-22508354                                         26   3.6  
12_01_0604 - 4949977-4950327                                           26   4.7  
06_01_0079 - 633595-633985,634346-634543,634864-635036,635355-63...    26   4.7  
12_02_1095 - 26036283-26036481,26036582-26036772,26037069-260381...    25   6.2  
10_05_0017 + 8037822-8038211                                           25   6.2  
08_01_0101 + 725972-726200,726407-726675,726927-727049,727742-72...    25   8.2  
02_01_0485 + 3487578-3487635,3488281-3488399,3488600-3488698,348...    25   8.2  

>09_04_0350 + 16899076-16900164
          Length = 362

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/41 (48%), Positives = 21/41 (51%)
 Frame = -1

Query: 221 ARSPLRVPGSGXDPWRYPRVDXAIVPASPTAGTTGGRLRDS 99
           AR P  V  SG + WR  R   A   AS TAG  GGR R S
Sbjct: 71  ARRPWLV-SSGAEAWR--RRGDAASAASATAGGAGGRSRRS 108


>05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802
          Length = 320

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 218 RSPLRVPGSGXDPWRYPRVDXAIVPASPTAG 126
           R P ++P     P+ +PR D A+ P+SP  G
Sbjct: 40  RQPAKIPA----PFVWPRADVALPPSSPPTG 66


>04_04_0069 + 22506885-22508354
          Length = 489

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 20/41 (48%), Positives = 21/41 (51%)
 Frame = -1

Query: 221 ARSPLRVPGSGXDPWRYPRVDXAIVPASPTAGTTGGRLRDS 99
           AR P  V G G +  R  R   A  PAS TAG  GGR R S
Sbjct: 82  ARRPWLV-GGGAEASR--RRGDAASPASATAGGAGGRSRRS 119


>12_01_0604 - 4949977-4950327
          Length = 116

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 80  HASSSFGCPSTCHRWCRRLG 139
           HA  SF   + C RWC R G
Sbjct: 27  HAIISFTRAAACDRWCVRFG 46


>06_01_0079 -
           633595-633985,634346-634543,634864-635036,635355-635599,
           635683-635860,636291-636473,636769-636873,637709-637846,
           637933-638925
          Length = 867

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 179 WRYPRVDXAIVPASPTAGTTGGRLRDSRS 93
           +  PR+D   +PA PTA    G L   RS
Sbjct: 48  YELPRIDPVDLPAIPTAQPVSGPLVPGRS 76


>12_02_1095 -
           26036283-26036481,26036582-26036772,26037069-26038198,
           26038275-26038431,26038595-26038670,26038744-26038866,
           26038950-26039114,26039208-26039298,26039622-26039706,
           26039793-26039948,26040045-26040101,26040179-26040277,
           26040523-26040635,26041022-26041079
          Length = 899

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 209 LRVPGSGXDPWRYPRVDXAIVPASP 135
           L   G G  PW  PR+D  ++   P
Sbjct: 419 LNFQGHGVSPWLQPRIDSPLLGLKP 443


>10_05_0017 + 8037822-8038211
          Length = 129

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 8   RVNFERNLHFINKNGLE 58
           RVN +R+ H +NK GLE
Sbjct: 89  RVNAKRSRHHLNKEGLE 105


>08_01_0101 +
           725972-726200,726407-726675,726927-727049,727742-728248
          Length = 375

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 80  HASSSFGCPSTCHRW 124
           H++SS  C   CHRW
Sbjct: 311 HSTSSRVCSRVCHRW 325


>02_01_0485 +
           3487578-3487635,3488281-3488399,3488600-3488698,
           3488795-3488851,3488954-3489109,3489227-3489311,
           3489489-3489579,3489693-3489857,3489923-3490045,
           3490244-3490319,3490486-3490633,3490769-3491934,
           3492041-3492231,3492321-3492513
          Length = 908

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 209 LRVPGSGXDPWRYPRVDXAIVPASP 135
           L   G G  PW  PR+D +++   P
Sbjct: 417 LNFGGLGMSPWMQPRLDSSLLGLQP 441


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,561,001
Number of Sequences: 37544
Number of extensions: 91398
Number of successful extensions: 296
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)