Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30k16
         (224 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclas...    25   5.5  
Z82085-7|CAB04988.1|  185|Caenorhabditis elegans Hypothetical pr...    25   9.6  
AL110482-7|CAB54388.1|  106|Caenorhabditis elegans Hypothetical ...    25   9.6  

>U23178-1|AAK68301.1| 1280|Caenorhabditis elegans Guanylyl cyclase
           protein 12 protein.
          Length = 1280

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 60  VIIALCITLAVASAVPQPA 116
           VI ALC+T   A AVP P+
Sbjct: 33  VIAALCVTSCDADAVPAPS 51


>Z82085-7|CAB04988.1|  185|Caenorhabditis elegans Hypothetical
          protein ZK218.8 protein.
          Length = 185

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 11 VNFERNLHFINKNGLE 58
          VNFE+ LH++N   +E
Sbjct: 43 VNFEKGLHYVNAGTIE 58


>AL110482-7|CAB54388.1|  106|Caenorhabditis elegans Hypothetical
           protein Y39G8B.9 protein.
          Length = 106

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 57  KVIIALCITLAVASAVPQ 110
           K +I LC+ +AVA A PQ
Sbjct: 2   KYLIVLCLVIAVALAKPQ 19


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,445,496
Number of Sequences: 27780
Number of extensions: 68087
Number of successful extensions: 187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)