Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt30k16
         (224 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    27   0.028
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   0.80 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    19   7.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    19   7.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          19   9.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      19   9.9  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 27.1 bits (57), Expect = 0.028
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 17  FERNLHFINKNGLESDYCFMHHASSSFGCPSTCHRWCRRLGRLEQW 154
           FE ++  +NK+     + +MH    +      C R C RLGR++++
Sbjct: 218 FEGDIRIVNKDRRGELFYYMHQQIMA---RYNCERLCNRLGRVKRF 260


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 0.80
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
 Frame = +2

Query: 83  ASSSFGCPST-----CHR----WCRRLGRLEQWXSQPLDTSMDRIRS 196
           AS++FG PST      HR      ++ G  + W  + L+ ++D +R+
Sbjct: 433 ASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRT 479


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.0 bits (37), Expect = 7.5
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 176 RYPRVDXAIVPASPTAGTTGG 114
           ++P +  A  P+S    TT G
Sbjct: 345 KFPSLACAAEPSSDAVSTTSG 365


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 19.0 bits (37), Expect = 7.5
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = +1

Query: 139 EAGTMAQSTLGYLHG 183
           ++ ++A++  GY+HG
Sbjct: 233 QSDSLAENVEGYVHG 247


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 64  ITFETIFIDKMQVSFE 17
           + FE++ IDK+   F+
Sbjct: 451 VKFESVNIDKLYTYFD 466


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 64  ITFETIFIDKMQVSFE 17
           + FE++ IDK+   F+
Sbjct: 451 VKFESVNIDKLYTYFD 466


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,151
Number of Sequences: 438
Number of extensions: 793
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3533460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)